Submit protein folding tasks to the AlphaFold3 C550 inference platform. Use when the user needs to run AlphaFold3 predictions with pre-prepared JSON input files on the AI4S Kubernetes cluster.
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AGI4Sci/SciForge832026年9月3日 更新
免费在 GitHub 公开
mineru
Parse PDFs, Office files, images, and HTML into Markdown/structured outputs with MinerU. Use when SciForge or Codex needs document parsing/OCR for scientific papers, supplementary files, PDFs, scanned documents, tables, formulas, or URL/local-file parsing through MinerU standard or Agent lightweight APIs.
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查看安装方法包含的文件（4）
- SKILL.md2.5 KB
- agents/openai.yaml186 B
- references/api.md2.7 KB
- scripts/mineru_parse.py11.8 KB
SKILL.md（原文）
安装前可以查看交给 AI 代理的指令内容。
MinerU
Use MinerU to turn PDFs, Office files, images, and HTML into Markdown and structured outputs for downstream research workflows.
Choose API Mode
- Prefer standard mode for scientific papers and reproducible project work. It requires
MINERU_API_KEY, supports files up to 200 MB / 200 pages, batch upload,pipeline/vlm/MinerU-HTML, tables, formulas, and zip outputs. - Use agent mode for quick, small, non-sensitive parsing. It needs no token, is IP-rate-limited, supports a single file or URL, returns Markdown only, and is intended for lightweight agent workflows.
Do not store API keys in skill files, source code, logs, or committed .env files. Read standard API credentials from MINERU_API_KEY.
Quick Commands
Use the bundled CLI:
python .codex/skills/mineru/scripts/mineru_parse.py standard-file path/to/paper.pdf --output-dir outputs/results/mineru/paper --model-version vlm --extra-format html
python .codex/skills/mineru/scripts/mineru_parse.py standard-url https://example.com/paper.pdf --output-dir outputs/results/mineru/paper --model-version vlm
python .codex/skills/mineru/scripts/mineru_parse.py agent-file path/to/small.pdf --output-dir /tmp/mineru-small
python .codex/skills/mineru/scripts/mineru_parse.py agent-url https://example.com/small.pdf --output-dir /tmp/mineru-small
For local files in standard mode, the CLI requests a signed upload URL, uploads the file, polls the batch result, downloads the result zip, and extracts it.
For standard URL mode, the CLI submits the URL task, polls it, downloads the result zip, and extracts it.
For agent mode, the CLI downloads the returned Markdown file.
Recommended Defaults
- Use
--model-version vlmfor scientific papers with formulas, tables, and figures. - Use
--model-version MinerU-HTMLonly for HTML source files. - Use
--pagesto limit expensive or slow parses during tests. - Keep raw PDFs and downloaded zips in ignored local folders; commit only extracted, reviewed Markdown/metadata when appropriate.
Resources
scripts/mineru_parse.py: deterministic CLI wrapper for MinerU API calls.references/api.md: concise API reference extracted from the local MinerU HTML documentation.
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同一仓库的技能
Build and sharpen a project's domain model. Use when discussing codebase terminology, writing or editing a CONTEXT.md, or recording or editing an ADR.
中文简介正在准备中。当前显示原文说明。
AGI4Sci/SciForge832026年9月3日 更新
A relentless interview to sharpen a plan or design, which also creates docs (ADR's and glossary) as we go.
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AGI4Sci/SciForge832026年9月3日 更新
grilling
免费Grill the user relentlessly about a plan, decision, or idea. Use when the user wants to stress-test their thinking, or uses any 'grill' trigger phrases.
中文简介正在准备中。当前显示原文说明。
AGI4Sci/SciForge832026年9月3日 更新
Implement tasks from an OpenSpec change. Use when the user wants to start implementing, continue implementation, or work through tasks.
中文简介正在准备中。当前显示原文说明。
AGI4Sci/SciForge832026年9月3日 更新
Archive a completed change in the experimental workflow. Use when the user wants to finalize and archive a change after implementation is complete.
中文简介正在准备中。当前显示原文说明。
AGI4Sci/SciForge832026年9月3日 更新