AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.
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NVIDIA RAG Blueprint deployment, configuration, troubleshooting, and shutdown guidance for Docker, Helm, and library-based RAG stacks.
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查看安装方法安装前可以查看交给 AI 代理的指令内容。
Use this skill for NVIDIA RAG Blueprint operations: deployment, configuration, troubleshooting, shutdown, and feature management across Docker, Helm, and library deployments.
Determine what the user wants and route immediately:
| User Intent | Action |
|---|---|
| Deploy, install, set up, start RAG | Read and follow references/deploy.md |
| Configure, enable, change, toggle a feature | Use the Configure section below |
| Troubleshoot, debug, fix, error, unhealthy | Read and follow references/troubleshoot.md |
| Stop, shutdown, tear down, clean up | Read and follow references/shutdown.md |
If the intent is ambiguous, infer from context (e.g., "RAG isn't working" → troubleshoot; "get RAG running" → deploy). Only ask if genuinely unclear.
Requires a running RAG deployment. If services are not running, deploy first via references/deploy.md.
Match the user's request to a reference file, then read and follow it:
| Feature Keywords | Reference |
|---|---|
| VLM, VLM embeddings, image captioning | references/configure/vlm.md |
| NeMo Guardrails | references/configure/guardrails.md |
| Agentic RAG, planning/execution agent, agentic streaming, stage events | references/configure/agentic-rag.md |
| Query rewriting, decomposition, multi-turn | references/configure/query-and-conversation.md |
| Ingestion (text-only, audio, Nemotron Parse, OCR, batch CLI, NV-Ingest, volume mount, performance) | references/configure/ingestion.md |
| Search, retrieval, hybrid search, multi-collection, metadata, filters, Elasticsearch filters, reranker, topK, accuracy/performance | references/configure/search-and-retrieval.md |
| LLM/embedding/ranking model changes, vector DB, Milvus/Elasticsearch auth, service keys, model profiles, ports/GPU | references/configure/models-and-infrastructure.md |
Reasoning, thinking mode, reasoning_content, self-reflection, prompts, generation params (tokens, temperature, citations), per-request LLM params | references/configure/reasoning-and-generation.md |
| Summarization | references/configure/summarization.md |
| Observability (tracing, Zipkin, Grafana, Prometheus) | references/configure/observability.md |
| Multimodal query (image + text) | references/configure/multimodal-query.md |
| Data catalog (collection/document metadata) | references/configure/data-catalog.md |
| User interface (UI settings, reasoning panel, metadata filters) | references/configure/user-interface.md |
| API reference (endpoints, schemas) | references/configure/api-reference.md |
| Evaluation (RAGAS metrics) | references/configure/evaluation.md (and skill rag-eval) |
| MCP server & client, agent toolkit | references/configure/mcp.md |
| Migration (version upgrades) | references/configure/migration.md |
| Notebooks (setup and catalog) | references/configure/notebooks.md |
Match the user's request to a reference file from the table above.
Detect what's running:
echo "=== NIM ===" && docker ps --format '{{.Names}}' 2>/dev/null | grep -iE '(nim-llm|nemotron-(vlm-)?embedding|nemotron-ranking|nemotron-vlm|nemotron-3-nano-omni|page-elements|graphic-elements|table-structure|nemotron-ocr)' || echo "NO_LOCAL_NIMS"; echo "=== RAG ===" && docker ps --format '{{.Names}}' 2>/dev/null | grep -iE '(rag-server|ingestor-server|elasticsearch|milvus|seaweedfs|lancedb)' || echo "NO_DOCKER_RAG"; echo "=== K8S ===" && kubectl get pods -n rag 2>/dev/null | head -5 || echo "NO_K8S"; echo "=== LIBRARY ===" && ps aux 2>/dev/null | grep -E '(nvidia_rag|uvicorn.*rag)' | grep -v grep || echo "NO_LIBRARY"
Use this table to determine platform, deployment type, and where config lives:
| Local NIMs running? | RAG services running? | Deployment Type | Config Location |
|---|---|---|---|
| Yes (Docker) | Any | Self-hosted | deploy/compose/.env |
| No | Yes (Docker) | NVIDIA-hosted | deploy/compose/nvdev.env |
| Yes (K8s pods) | Any | Self-hosted | values.yaml (NIM sections) |
| No | Yes (K8s pods) | NVIDIA-hosted | values.yaml (envVars) |
| — | Library processes | Library mode | notebooks/config.yaml |
| No | No | Not running | Deploy first via references/deploy.md |
Tell the user what you detected and ask to confirm. Example: "I see local NIM containers running (nim-llm-ms, nemotron-vlm-embedding-ms) — this is a self-hosted deployment. Config file is deploy/compose/.env. Correct?"
Check current feature state before changing anything — read the config location from step 3, then cross-check the live service:
docker exec rag-server env 2>/dev/null | grep -E "<VAR_NAME>"kubectl get pod -n rag -l app=rag-server -o jsonpath='{.items[0].spec.containers[0].env}' 2>/dev/nullIf the config file and live service disagree, tell the user the service has stale config and will need a restart.
If the feature needs extra GPUs, check availability against hardware restrictions (see below):
nvidia-smi --query-gpu=index,name,memory.total,memory.used --format=csv,noheader 2>/dev/null || echo "NO_GPU"
Read the reference file and apply changes:
source <env-file> && docker compose -f deploy/compose/<compose-file> up -d
| Service | Compose File |
|---|---|
| rag-server | docker-compose-rag-server.yaml |
| ingestor-server | docker-compose-ingestor-server.yaml |
| Elasticsearch, Milvus, etcd, SeaweedFS | vectordb.yaml |
| NIM containers (LLM, embedding, ranking, VLM, OCR, parse, audio, extraction) | nims.yaml |
| guardrails | docker-compose-nemo-guardrails.yaml |
| observability (Grafana, Prometheus, Zipkin) | observability.yaml |
values.yaml, then upgrade: helm upgrade rag <chart> -n rag -f values.yamlnotebooks/config.yaml, then restart the Python processVerify:
docker ps --format "table {{.Names}}\t{{.Status}}" | head -20; curl -s http://localhost:8081/v1/health?check_dependencies=true 2>/dev/null | head -1kubectl get pods -n rag; kubectl rollout status deployment/rag-server -n rag --timeout=120scurl -s http://localhost:8081/v1/health 2>/dev/null | head -1If restart fails, read references/troubleshoot.md. If multiple features requested, repeat from step 1 for each.
references/deploy.md.references/configure/vlm.md.references/troubleshoot.md.references/shutdown.md.NGC_API_KEY must be supplied by the user environment.| Error / signal | What to do |
|---|---|
| Services are not running | Follow references/deploy.md before configuring features. |
| Restart or health check fails | Follow references/troubleshoot.md. |
| User requests teardown | Follow references/shutdown.md and confirm destructive cleanup. |
Run steps 2–3 above, then read the identified config file to list what's currently enabled:
grep -E "^(export )?(ENABLE_|APP_)" <config-file> 2>/dev/null | sort
Summarize what's running and enabled, then ask which feature to change.
Read docs/support-matrix.md for current GPU requirements per deployment mode.
Read docs/service-port-gpu-reference.md for port mappings and GPU assignments.
| GPU | Feature Restrictions |
|---|---|
| B200 | No VLM, No Guardrails, No Nemotron Parse. May need multi-GPU LLM (LLM_MS_GPU_ID). |
| RTX PRO 6000 | No Nemotron Parse. No Audio on Helm. |
Before claiming "skill applied successfully":
This skill is written to stay usable across GitHub Copilot, Claude Code, and Codex.
$CODEX_HOME/skills/rag-blueprint and restart Codex after major changes.Preferred MCP Server: None required
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AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.
中文简介正在准备中。当前显示原文说明。
Improve the clarity and voice of AI-assisted academic writing (papers, theses, rebuttals) and
中文简介正在准备中。当前显示原文说明。
12-agent academic paper writing pipeline. 11 modes (full/plan/outline/revision/revision-coach/abstract/lit-review/format-convert/citation-check/disclosure/rebuttal-audit). 6 paper types, 5 citation formats, bilingual abstracts, LaTeX/DOCX-via-Pandoc/PDF output. Style Calibration + Writing Quality Check + Anti-Patterns with IRON RULE markers. Triggers: write paper, academic paper, guide my paper, parse reviews, audit my rebuttal, check my response draft, AI disclosure, 寫論文, 學術論文, 引導我寫論文, 審查意見, 評估回覆, 논문 작성, 초록 작성, 논문 수정, 논문 계획을 도와줘, 심사 의견 반영, 답변서 점검, AI 사용 고지.
中文简介正在准备中。当前显示原文说明。
Systematic writing framework for philosophy and interdisciplinary academic papers from optimized outline to submission-ready manuscript. Use when users want to: (1) write a paper from a detailed outline, (2) ensure quality control during writing, (3) maintain consistency across chapters, (4) prepare a submission-ready manuscript, or (5) systematically execute a planned paper. Triggered by phrases like 'write the paper from this outline,' 'compose the full manuscript,' 'execute the outline,' or when users have completed strategic planning (academic-paper-strategist skill) and are ready to write. Takes optimized outline as input; outputs complete manuscript with iterative quality checks.
中文简介正在准备中。当前显示原文说明。
Multi-perspective academic paper review with dynamic reviewer personas. Runs a 5-seat, role-separated review panel (Journal-Fit Reviewer + 3 peer-review roles + Devil's Advocate) with field-specific expertise; role separation is not a claim of independent error processes. Supports full review, re-review (verification), quick assessment, methodology focus, Socratic guided, and calibration modes. Triggers on: review paper, peer review, manuscript review, referee report, review my paper, critique paper, simulate review, editorial review, calibrate reviewer, reviewer calibration, measure reviewer accuracy, 審查論文, 論文審查, 模擬審查, 同儕審查, 幫我審這篇, 以審查人角度評估, 審查者校準, 논문 심사, 동료 심사, 모의 심사, 심사자 관점에서 평가, 심사자 보정.
中文简介正在准备中。当前显示原文说明。
Systematic strategic planning framework for philosophy and interdisciplinary academic papers targeting preprint platforms (PhilArchive, arXiv, PhilSci-Archive). Use when users want to: (1) plan a paper on a specific topic, (2) identify research gaps and assess originality, (3) develop optimized paper outlines, (4) prepare for preprint submission, or (5) understand platform requirements and writing standards. Triggered by phrases like 'plan a paper on,' 'help me design a paper about,' 'identify research gaps in,' 'is this idea original,' or when users need structured research planning. The skill guides through three phases: Platform Analysis (identifying target venue and studying sample papers), Theoretical Framework (AI-driven literature search and gap identification), and Outline Optimization (structured design with reviewer-perspective self-assessment). Each phase includes quality evaluation standards and validation checkpoints.
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