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obsidian-literature-workflow

Use this skill when the user keeps paper notes inside an Obsidian project knowledge base and wants filesystem-first literature review, explicit agent-first Zotero ingestion, `Papers/` plus `Knowledge/` synthesis, collection-wide normalization, and a default literature canvas without Obsidian MCP.

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集成工具Obsidian
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包含的文件(6)

  • SKILL.md3.8 KB
  • references/CANVAS-WORKFLOW.md1.7 KB
  • references/GRAPH-WORKFLOW.md768 B
  • references/PAPER-NOTE-SCHEMA.md1.3 KB
  • scripts/build_literature_canvas.py22.6 KB
  • scripts/build_literature_graph.py9.4 KB

SKILL.md(原文)

安装前可以查看交给 AI 代理的指令内容。

Obsidian Literature Workflow

Handle the literature sub-workflow inside the filesystem-first Obsidian project knowledge base.

Role in the workflow

This is a supporting skill under obsidian-project-memory.

Use it when the user says things like:

  • “My papers are in Obsidian”
  • “Read papers from Zotero and create notes in the vault”
  • “Review the notes under Papers/”
  • “Generate literature knowledge notes from this project vault”
  • “Connect paper notes to project knowledge”
  • “Show me the literature structure as a map/graph”
  • “Check whether all papers already have detailed notes”

Assumptions

  • The project is already bound through .claude/project-memory/registry.yaml, or can be imported with obsidian-project-bootstrap
  • Durable paper notes live under Papers/ inside Research/{project-slug}/
  • Obsidian note writing is done through the filesystem; no Obsidian MCP is required
  • Zotero may still be used as the source of metadata/full text; use $zotero-obsidian-bridge when the source corpus is in Zotero

Default workflow

  1. Read bound project memory and locate the vault root.
  2. If the source papers are in Zotero, explicitly use $zotero-obsidian-bridge to pull them into canonical Papers/*.md notes.
  3. Scan Papers/ and adjacent synthesis notes using filesystem tools.
  4. Normalize note metadata and structure using $obsidian-markdown.
    • Prefer the standardized review schema:
      • Claim
      • Method
      • Evidence
      • Limitation
      • Direct relevance to repo
      • Relation to other papers
  5. Query narrowly first:
    • read the relevant paper notes,
    • then the linked Knowledge/ notes,
    • and only then open Writing/ if the user asked for a review or comparison deliverable.
  6. Prefer updating existing paper notes and literature synthesis notes over creating sibling notes.
  7. Default literature synthesis should land in Knowledge/, not Experiments/ or Results/:
    • update Knowledge/Literature-Overview.md
    • update Knowledge/Method-Families.md
    • update Knowledge/Research-Gaps.md when the synthesis is stable enough to deserve canonical notes.
  8. If the source is a named collection and the user cares about completeness, maintain a collection inventory note with explicit coverage mapping.
  9. Refresh Maps/literature.canvas after major paper-note changes or batch note creation.
    • Prefer argument-map structure over dense all-to-all links.
    • Prefer semantic filtering and edge thinning.
    • Create Maps/literature-main.canvas only when a lightweight presentation graph is needed.
  10. Update the daily note and project memory with what changed.

Default outputs

  • Papers/ remains first-class: one durable paper note per paper whenever possible
  • Knowledge/ holds durable literature synthesis notes
  • Maps/literature.canvas is the default visual graph surface
  • literature work should usually produce at least one of:
    • new or updated paper notes,
    • new or updated knowledge notes,
    • literature-canvas refresh,
    • optional writing synthesis when requested

Default stance

Do not assume by default:

  • Concepts/
  • Datasets/
  • .base views

The literature workflow may create Maps/literature.canvas by default. Other artifacts still require explicit justification.

References

Load only what is needed:

  • references/PAPER-NOTE-SCHEMA.md - detailed paper-note frontmatter and sections
  • references/CANVAS-WORKFLOW.md - how and when to refresh Maps/literature.canvas

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