METAINFORMANT rules for directory src/metainformant/eqtl. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
中文简介正在准备中。当前显示原文说明。
查看安装方法安装前可以查看交给 AI 代理的指令内容。
src/metainformant/eqtlBefore editing files in this subtree:
AGENTS.md for this folder (canonical technical context).README.md.CLAUDE.md at repo root (uv, output/, .tmp/, real implementations).docs/REAL_IMPLEMENTATION_POLICY.md.metainformant.core.io for file I/O and metainformant.core.utils.logging for logs.This module provides reusable eQTL analysis components: synthetic and real
expression/genotype data preparation, transcriptome SNP-calling pipeline
methods (HISAT2 alignment + bcftools variant calling), and bcftools stats
parsing. Scripts under scripts/eqtl/ are thin orchestrators that import
from this module.
Example: >>> from metainformant.eqtl.workflow.synthetic import create_synthetic_data >>> expr, geno, gene_pos, var_pos = create_synthetic_data( ... n_genes=5, n_variants=25, n_samples=12 ... ) >>> expr.shape (5, 12)
pipeline, variant_stats.import metainformant.eqtl (submodules: from metainformant import eqtl then eqtl.<submodule>).uv run pytest tests/eqtl -q (one pytest directory per invocation).Keep changes scoped; match existing patterns in this directory.
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METAINFORMANT rules for directory .agents. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
中文简介正在准备中。当前显示原文说明。
METAINFORMANT rules for directory .agents/workflows. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
中文简介正在准备中。当前显示原文说明。
METAINFORMANT rules for directory archive/scripts_reorganize. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
中文简介正在准备中。当前显示原文说明。
METAINFORMANT rules for directory config. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
中文简介正在准备中。当前显示原文说明。
METAINFORMANT rules for directory config/amalgkit. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
中文简介正在准备中。当前显示原文说明。
METAINFORMANT rules for directory config/config_base. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
中文简介正在准备中。当前显示原文说明。