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metainformant-src-metainformant-phenotype

METAINFORMANT rules for directory src/metainformant/phenotype. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.

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docxology/MetaInformAnt
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包含的文件（1）

  • SKILL.md1.9 KB

SKILL.md（原文）

安装前可以查看交给 AI 代理的指令内容。

METAINFORMANT — src/metainformant/phenotype

Before editing files in this subtree:

  • Read AGENTS.md for this folder (canonical technical context).
  • Optional overview: README.md.
  • Global rules: CLAUDE.md at repo root (uv, output/, .tmp/, real implementations).
  • Testing policy: docs/REAL_IMPLEMENTATION_POLICY.md.
  • Use metainformant.core.io for file I/O and metainformant.core.utils.logging for logs.

Module surface (generated, validated)

  • Purpose: Phenotype module for MetaInformAnt.

Comprehensive phenotypic trait analysis including:

  • Morphological measurements and allometric analysis
  • Behavioral sequences, ethograms, and diversity metrics
  • Chemical profiles (GC-MS, CHC) with distance and marker detection
  • Acoustic signals with spectral and temporal analysis
  • Electronic tracking (RFID, video, GPS) with movement ecology
  • Life course trajectory analysis
  • Cross-omic integration (phenotype-genotype, trait-expression)
  • Configurable analysis pipelines
  • Public submodules: analysis, behavior, chemical, data, electronic, gwas_integration, integration, morphological, sonic, visualization, workflow.
  • Canonical import: import metainformant.phenotype (submodules: from metainformant import phenotype then phenotype.<submodule>).
  • Test entry point: uv run pytest tests/phenotype -q (one pytest directory per invocation).

Keep changes scoped; match existing patterns in this directory.

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