abinit
免费Generate and manage ABINIT DFT calculations. Use when the user requests ABINIT, or needs DFPT phonons, GW calculations, or BSE optical spectra.
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VASP band structure calculation. Two-step workflow with SCF charge density followed by non-SCF band calculation along high-symmetry k-path.
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Compute electronic band structure along high-symmetry k-point paths. Requires a two-step process: self-consistent charge density, then non-SCF calculation along the k-path.
This separation is necessary because the high-symmetry k-path does not provide uniform Brillouin zone sampling needed for SCF convergence.
from catgo.workflow import Workflow
from catgo.workflow.builtins import geo_opt, single_point
wf = Workflow("TiO2 band structure")
struct = wf.add_task("structure_input", structure=structure_json)
# Step 1: Optimize (skip if already relaxed)
opt = wf.add_task(geo_opt, structure=struct.output.structure,
ISIF=3, system_name="relax")
# Step 2: SCF single point to generate CHGCAR
scf = wf.add_task(single_point, structure=opt.output.structure,
LCHARG=True, # Write CHGCAR
EDIFF=1e-6, # Tight convergence
system_name="SCF")
# Step 3: Non-SCF band calculation
band = wf.add_task(single_point, structure=opt.output.structure,
ICHARG=11, # Read CHGCAR, do not update
LORBIT=11, # Projected band character
LCHARG=False,
LWAVE=False,
kpath_mode="auto", # Auto-detect high-symmetry path
kpath_density=40, # Points per segment
system_name="bands")
wf.submit()
catgo_workflow_engine(action="create", params={"name": "Band structure"})
# Input structure
catgo_workflow_engine(action="add_task", params={
"workflow_id": "wf_xxx",
"task_type": "structure_input",
"structure": "<json>"
})
# SCF single point
catgo_workflow_engine(action="add_task", params={
"workflow_id": "wf_xxx",
"task_type": "single_point",
"software": "vasp",
"structure": "{{t_001.output.structure}}",
"LCHARG": true,
"EDIFF": 1e-6,
"system_name": "SCF"
})
# Non-SCF band calculation
catgo_workflow_engine(action="add_task", params={
"workflow_id": "wf_xxx",
"task_type": "single_point",
"software": "vasp",
"structure": "{{t_001.output.structure}}",
"ICHARG": 11,
"LORBIT": 11,
"kpath_mode": "auto",
"kpath_density": 40,
"system_name": "bands"
})
catgo_workflow_engine(action="submit", params={"workflow_id": "wf_xxx"})
Set kpath_mode="auto" to let the engine detect the Bravais lattice and generate the standard k-path. This works for most crystal systems.
For custom paths, specify k-points explicitly:
band = wf.add_task(single_point, structure=opt.output.structure,
ICHARG=11,
kpath_mode="manual",
kpath_points={
"G": [0.0, 0.0, 0.0],
"X": [0.5, 0.0, 0.0],
"M": [0.5, 0.5, 0.0],
"G2": [0.0, 0.0, 0.0],
"R": [0.5, 0.5, 0.5],
},
kpath_segments=["G-X", "X-M", "M-G2", "G2-R"],
kpath_density=40,
system_name="bands")
| System | Path | Example |
|---|---|---|
| FCC | G-X-W-K-G-L-U-W-L-K | Cu, Al, Pt |
| BCC | G-H-N-G-P-H | Fe, W, Cr |
| HCP | G-M-K-G-A-L-H-A | Ti, Ru, Co |
| Tetragonal | G-X-M-G-Z-R-A-Z | TiO2 rutile |
| Simple cubic | G-X-M-G-R-X | SrTiO3 |
| Parameter | Value | Purpose |
|---|---|---|
| ICHARG | 11 | Read CHGCAR, non-self-consistent |
| LORBIT | 11 | Atom- and orbital-projected bands |
| NBANDS | auto | Number of bands (increase for unoccupied states) |
| LCHARG | False | Do not overwrite CHGCAR from SCF step |
| LWAVE | False | Do not write WAVECAR (saves disk) |
| kpath_density | 40 | K-points per segment (more = smoother bands) |
For magnetic systems:
scf = wf.add_task(single_point, structure=s,
LCHARG=True, ISPIN=2,
MAGMOM="2*5.0 4*0.6",
system_name="SCF_spin")
band = wf.add_task(single_point, structure=s,
ICHARG=11, ISPIN=2, LORBIT=11,
kpath_mode="auto", kpath_density=40,
system_name="bands_spin")
HSE06 band structure is expensive but more accurate for band gaps:
scf = wf.add_task(single_point, structure=s,
LCHARG=True, LHFCALC=True, HFSCREEN=0.2,
AEXX=0.25, ALGO="Damped", TIME=0.4,
system_name="SCF_HSE")
band = wf.add_task(single_point, structure=s,
ICHARG=11, LHFCALC=True, HFSCREEN=0.2,
AEXX=0.25, ALGO="Damped", TIME=0.4,
kpath_mode="auto", kpath_density=20,
system_name="bands_HSE")
Note: HSE band calculations are 10-100x more expensive than PBE. Use a lower kpath_density (20) and fewer NBANDS.
Run both from the same SCF calculation:
scf = wf.add_task(single_point, structure=opt.output.structure,
LCHARG=True, EDIFF=1e-6, system_name="SCF")
# DOS branch
dos_sp = wf.add_task(single_point, structure=opt.output.structure,
ISMEAR=-5, NEDOS=3001, LORBIT=11,
system_name="DOS")
# Band branch
band = wf.add_task(single_point, structure=opt.output.structure,
ICHARG=11, LORBIT=11,
kpath_mode="auto", kpath_density=40,
system_name="bands")
| Problem | Fix |
|---|---|
| Bands look wrong / discontinuous | CHGCAR from SCF may be on different k-mesh. Ensure SCF used uniform mesh |
| Band gap too small (PBE) | Expected — PBE underestimates gaps. Use HSE06 for accurate gaps |
| Missing unoccupied bands | Increase NBANDS (default may cut off conduction bands) |
| ICHARG=11 error | CHGCAR must exist from SCF step. Check SCF completed with LCHARG=True |
| Very slow HSE | Normal — reduce kpath_density, reduce NBANDS, use more nodes |
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Generate and manage ABINIT DFT calculations. Use when the user requests ABINIT, or needs DFPT phonons, GW calculations, or BSE optical spectra.
中文简介正在准备中。当前显示原文说明。
Use when the user asks to place an adsorbate molecule on a surface, find adsorption sites, or set up a surface+adsorbate model for DFT.
中文简介正在准备中。当前显示原文说明。
Use when the user asks for adsorption energy, binding energy, or wants to compare how strongly a molecule binds to a surface.
中文简介正在准备中。当前显示原文说明。
Use when the user asks to analyze computational results: Gibbs free energy, OER/HER/CO2RR overpotentials, adsorption energy, convergence tests, DOS/d-band analysis, or Bader charge analysis.
中文简介正在准备中。当前显示原文说明。
Use AmberTools antechamber for molecular force field parameterization. Generates GAFF/GAFF2 parameters and AM1-BCC or RESP charges for use in AMBER or LAMMPS classical MD simulations.
中文简介正在准备中。当前显示原文说明。
One-shot recipes for adding, deleting, moving, and replacing individual atoms in the active CatGo viewer structure. Use whenever the user asks to "add an atom", "delete atoms", "remove this atom", "move atom N", "replace H with Li", or any single-atom edit — including "add a hydrogen on top of atom 12" / "delete atoms 5–9" / "swap the oxygen at site 3 for fluorine". Skips the discovery loop (no need to list structure tools or check adsorption sites first); goes straight to the matching `catgo_structure` action. Triggers in Chinese on 加原子, 删原子, 减原子, 移动原子, 替换原子, 增加氢, 删除氧, 把 ... 换成 ....
中文简介正在准备中。当前显示原文说明。