abinit
免费Generate and manage ABINIT DFT calculations. Use when the user requests ABINIT, or needs DFPT phonons, GW calculations, or BSE optical spectra.
中文简介正在准备中。当前显示原文说明。
VASP single-point energy calculation. Used standalone, as a pre-step for DOS/band structure, or to evaluate energy at a fixed geometry.
中文简介正在准备中。当前显示原文说明。
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Compute the total energy (and optionally charge density, wavefunction) at a fixed geometry. No ionic relaxation.
🔴 Must discuss with user:
🟡 Recommend confirming:
🟢 Safe defaults:
from catgo.workflow import Workflow
from catgo.workflow.builtins import geo_opt, single_point
wf = Workflow("Single point energy")
struct = wf.add_task("structure_input", structure=structure_json)
sp = wf.add_task(single_point, structure=struct.output.structure,
system_name="TiO2_SP")
wf.submit()
MCP equivalent:
catgo_workflow_engine(action="create", params={"name": "Single point"})
catgo_workflow_engine(action="add_task", params={
"workflow_id": "wf_xxx",
"task_type": "single_point",
"software": "vasp",
"structure": "<json>",
"system_name": "TiO2_SP"
})
catgo_workflow_engine(action="submit", params={"workflow_id": "wf_xxx"})
Chain a single point after relaxation for a more accurate energy:
opt = wf.add_task(geo_opt, structure=struct.output.structure,
ISIF=2, system_name="relax")
sp = wf.add_task(single_point, structure=opt.output.structure,
ENCUT=600, # Higher cutoff for precise energy
EDIFF=1e-6, # Tighter SCF convergence
system_name="SP_precise")
Generate a converged charge density with a fine k-mesh for subsequent DOS:
sp = wf.add_task(single_point, structure=opt.output.structure,
LCHARG=True, # Write CHGCAR (needed for DOS)
LWAVE=True, # Write WAVECAR (optional, speeds up DOS)
ISMEAR=-5, # Tetrahedron method (accurate DOS)
NEDOS=3001, # Dense energy grid
EDIFF=1e-6, # Tight convergence
system_name="SP_for_DOS")
Generate CHGCAR for non-SCF band calculation:
sp = wf.add_task(single_point, structure=opt.output.structure,
LCHARG=True, # Write CHGCAR
ICHARG=2, # Self-consistent (generate charge)
system_name="SP_for_bands")
Test multiple ENCUT values at a fixed geometry:
wf = Workflow("ENCUT convergence")
struct = wf.add_task("structure_input", structure=structure_json)
for encut in [400, 450, 500, 550, 600]:
wf.add_task(single_point, structure=struct.output.structure,
ENCUT=encut, system_name=f"ENCUT={encut}")
wf.submit()
MCP equivalent:
catgo_workflow_engine(action="create", params={"name": "ENCUT convergence"})
catgo_workflow_engine(action="add_task", params={
"workflow_id": "wf_xxx",
"task_type": "structure_input",
"structure": "<json>"
})
# Repeat for each ENCUT value
catgo_workflow_engine(action="add_task", params={
"workflow_id": "wf_xxx",
"task_type": "single_point",
"software": "vasp",
"structure": "{{t_001.output.structure}}",
"ENCUT": 400,
"system_name": "ENCUT=400"
})
# ... repeat for 450, 500, 550, 600
| Parameter | Default | Purpose |
|---|---|---|
| NSW | 0 | No ionic steps (fixed geometry) |
| IBRION | -1 | No ionic optimizer |
| EDIFF | 1e-5 | SCF convergence (use 1e-6 for precise energy) |
| NEDOS | 3001 | Number of DOS points (increase for DOS calculations) |
| LCHARG | False | Write CHGCAR (set True for DOS/band pre-calc) |
| LWAVE | False | Write WAVECAR (set True to restart from wavefunction) |
| ISMEAR | 0 | Gaussian smearing (use -5 for DOS with tetrahedron) |
| LORBIT | 11 | Write projected DOS (DOSCAR with per-atom projections) |
| System type | ISMEAR | SIGMA | Notes |
|---|---|---|---|
| Insulator/semiconductor | 0 | 0.05 | Gaussian smearing (default) |
| Metal | 1 | 0.2 | Methfessel-Paxton |
| DOS calculation | -5 | N/A | Tetrahedron with Blochl corrections |
| Molecule in box | 0 | 0.01 | Small sigma, Gamma-only |
Rule: ISMEAR=-5 requires at least 3 k-points per direction. Do not use for Gamma-only calculations.
The single_point task produces:
output.energy — total DFT energy in eVoutput.structure — the (unchanged) input structure| Problem | Fix |
|---|---|
| SCF not converging | Try ALGO=All, increase NELM=400, or AMIX=0.1 |
| Negative NBANDS warning | Increase NBANDS explicitly |
| Memory error | Reduce NCORE, or increase node count |
| Wrong energy for magnetic system | Set ISPIN=2, provide MAGMOM |
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Generate and manage ABINIT DFT calculations. Use when the user requests ABINIT, or needs DFPT phonons, GW calculations, or BSE optical spectra.
中文简介正在准备中。当前显示原文说明。
Use when the user asks to place an adsorbate molecule on a surface, find adsorption sites, or set up a surface+adsorbate model for DFT.
中文简介正在准备中。当前显示原文说明。
Use when the user asks for adsorption energy, binding energy, or wants to compare how strongly a molecule binds to a surface.
中文简介正在准备中。当前显示原文说明。
Use when the user asks to analyze computational results: Gibbs free energy, OER/HER/CO2RR overpotentials, adsorption energy, convergence tests, DOS/d-band analysis, or Bader charge analysis.
中文简介正在准备中。当前显示原文说明。
Use AmberTools antechamber for molecular force field parameterization. Generates GAFF/GAFF2 parameters and AM1-BCC or RESP charges for use in AMBER or LAMMPS classical MD simulations.
中文简介正在准备中。当前显示原文说明。
One-shot recipes for adding, deleting, moving, and replacing individual atoms in the active CatGo viewer structure. Use whenever the user asks to "add an atom", "delete atoms", "remove this atom", "move atom N", "replace H with Li", or any single-atom edit — including "add a hydrogen on top of atom 12" / "delete atoms 5–9" / "swap the oxygen at site 3 for fluorine". Skips the discovery loop (no need to list structure tools or check adsorption sites first); goes straight to the matching `catgo_structure` action. Triggers in Chinese on 加原子, 删原子, 减原子, 移动原子, 替换原子, 增加氢, 删除氧, 把 ... 换成 ....
中文简介正在准备中。当前显示原文说明。