abinit
免费Generate and manage ABINIT DFT calculations. Use when the user requests ABINIT, or needs DFPT phonons, GW calculations, or BSE optical spectra.
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Diagnose and fix common VASP errors including ZBRENT, BRMIX, EDDDAV, VERY BAD NEWS, POTCAR mismatch, and memory errors.
中文简介正在准备中。当前显示原文说明。
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查看安装方法安装前可以查看交给 AI 代理的指令内容。
Use this skill when a VASP calculation has failed with a recognized error
message. These are runtime errors from the VASP executable, distinct from
convergence issues (see convergence_issues skill) and CatGo engine errors
(see workflow_errors skill).
catgo_workflow_engine(action: "get_result", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>"
})
Or check the step-level error:
catgo_workflow_engine(action: "status", params: { workflow_id: "<wf_id>" })
Cause: VASP cannot find the electronic groundstate within the bracketing interval during volume/cell relaxation (ISIF=3 or ISIF=7).
Fix:
catgo_workflow_engine(action: "modify_params", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>",
params: {
"IBRION": 1,
"EDIFF": 1e-6,
"NELM": 200,
"NSW": 200
}
})
Then retry:
catgo_workflow_engine(action: "retry", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>"
})
Alternative: switch from IBRION=2 (CG) to IBRION=1 (quasi-Newton), or
reduce POTIM from 0.5 to 0.1.
Cause: Charge density mixing fails. Common with slabs, surfaces, and systems with vacuum regions.
Fix:
catgo_workflow_engine(action: "modify_params", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>",
params: {
"ALGO": "All",
"AMIX": 0.1,
"BMIX": 0.01,
"AMIX_MAG": 0.2,
"BMIX_MAG": 0.01
}
})
For severe cases, also add LREAL = .FALSE. and increase NELM.
Cause: Davidson iterative diagonalization failed. Common for systems with many bands near the Fermi level (metals, small-gap semiconductors).
Fix:
catgo_workflow_engine(action: "modify_params", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>",
params: {
"ALGO": "All"
}
})
ALGO=All uses a combination of Davidson and RMM-DIIS that is more robust.
If that still fails, try ALGO=Damped.
Cause: Usually POSCAR has overlapping atoms (two atoms at the same position) or the structure is severely distorted.
Fix:
catgo_view(action: "get_state")
catgo_structure(action: "delete", indices: [<overlapping_index>])
Cause: The pseudopotential file does not match the elements in POSCAR, or the POTCAR path on the HPC is not configured correctly.
Fix:
catgo_system(action: "status")
Verify the element order matches. If the user has added/removed elements, the POTCAR needs to be regenerated. The CatGo engine handles this automatically, but manual HPC runs may have stale POTCARs.
Check that VASP_PP_PATH is set on the HPC.
Cause: Not enough memory for the calculation. Common with large systems, high ENCUT, or too many k-points.
Fix options:
Reduce memory usage:
catgo_workflow_engine(action: "modify_params", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>",
params: {
"NCORE": 4,
"KPAR": 2,
"LREAL": ".TRUE.",
"LWAVE": ".FALSE.",
"LCHARG": ".FALSE."
}
})
Or request more resources in the run config (increase nodes/memory).
Cause: Augmentation sphere overlap. Atoms are too close together.
Fix: Similar to VERY BAD NEWS -- check for overlapping or very close atoms.
Sometimes caused by too-aggressive ionic relaxation. Reduce POTIM:
catgo_workflow_engine(action: "modify_params", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>",
params: { "POTIM": 0.1 }
})
Cause: VASP symmetry detection fails on distorted or defective structures.
Fix:
catgo_workflow_engine(action: "modify_params", params: {
workflow_id: "<wf_id>",
task_id: "<task_id>",
params: { "SYMPREC": 1e-4, "ISYM": 0 }
})
Setting ISYM=0 disables symmetry entirely (safe but slower).
For any VASP error: diagnose (get error from task result), modify parameters,
retry, then verify. If the same error recurs after two attempts, the structure
itself may be problematic. If errors appear on every system, the HPC
environment may be misconfigured -- route to workflow_errors.
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Generate and manage ABINIT DFT calculations. Use when the user requests ABINIT, or needs DFPT phonons, GW calculations, or BSE optical spectra.
中文简介正在准备中。当前显示原文说明。
Use when the user asks to place an adsorbate molecule on a surface, find adsorption sites, or set up a surface+adsorbate model for DFT.
中文简介正在准备中。当前显示原文说明。
Use when the user asks for adsorption energy, binding energy, or wants to compare how strongly a molecule binds to a surface.
中文简介正在准备中。当前显示原文说明。
Use when the user asks to analyze computational results: Gibbs free energy, OER/HER/CO2RR overpotentials, adsorption energy, convergence tests, DOS/d-band analysis, or Bader charge analysis.
中文简介正在准备中。当前显示原文说明。
Use AmberTools antechamber for molecular force field parameterization. Generates GAFF/GAFF2 parameters and AM1-BCC or RESP charges for use in AMBER or LAMMPS classical MD simulations.
中文简介正在准备中。当前显示原文说明。
One-shot recipes for adding, deleting, moving, and replacing individual atoms in the active CatGo viewer structure. Use whenever the user asks to "add an atom", "delete atoms", "remove this atom", "move atom N", "replace H with Li", or any single-atom edit — including "add a hydrogen on top of atom 12" / "delete atoms 5–9" / "swap the oxygen at site 3 for fluorine". Skips the discovery loop (no need to list structure tools or check adsorption sites first); goes straight to the matching `catgo_structure` action. Triggers in Chinese on 加原子, 删原子, 减原子, 移动原子, 替换原子, 增加氢, 删除氧, 把 ... 换成 ....
中文简介正在准备中。当前显示原文说明。