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metabolights-skill

Find studies in MetaboLights, a database for research on metabolites, and retrieve study metadata by accession number. Receive concise Markdown summaries by default, with raw JSON available when you need machine-readable results.

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Submit compact MetaboLights requests for study discovery and study-level metabolomics metadata. Use when a user wants concise MetaboLights summaries

openai/plugins

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适用场景

Browse studies registered in MetaboLights
Look up a study by its MTBLS accession
Get a concise summary of study metadata
Retrieve study information as JSON for further processing

包含的文件（3）

SKILL.md1.8 KB
agents/openai.yaml100 B
scripts/rest_request.py10.5 KB

SKILL.md（原文）

安装前可以查看交给 AI 代理的指令内容。

Operating rules

Use scripts/rest_request.py for all MetaboLights calls.
Use base_url=https://www.ebi.ac.uk/metabolights/ws.
Start with studies for archive browsing and studies/<MTBLS accession> for targeted records.
Keep study discovery narrow and paged rather than pulling very large pages.
Re-run requests in long conversations instead of relying on older tool output.

Execution behavior

Return concise markdown summaries from the script JSON by default.
Return raw JSON only if the user explicitly asks for machine-readable output.
Prefer these paths: studies and studies/<MTBLS accession>.

Input

Read one JSON object from stdin.
Required fields: base_url, path
Optional fields: method, params, headers, json_body, form_body, record_path, response_format, max_items, max_depth, timeout_sec, save_raw, raw_output_path
Common MetaboLights patterns:
- {"base_url":"https://www.ebi.ac.uk/metabolights/ws","path":"studies","record_path":"content","max_items":10}
- {"base_url":"https://www.ebi.ac.uk/metabolights/ws","path":"studies/MTBLS1"}

Output

Success returns ok, source, path, method, status_code, warnings, and either compact records or a compact summary.
Use raw_output_path when save_raw=true.
Failure returns ok=false with error.code and error.message.

Execution

echo '{"base_url":"https://www.ebi.ac.uk/metabolights/ws","path":"studies","record_path":"content","max_items":10}' | python scripts/rest_request.py

References

No additional runtime references are required; keep the import package limited to this file and scripts/rest_request.py.

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