Research & Learning skills

Use this agent when you need to extract and summarize key findings from scientific references that are relevant to a gene's function. This agent should be used after references have been identified in a gene review to provide detailed supporting evidence from the literature. The agent will look up cached publications and extract only the most relevant findings related to the gene's direct function, excluding irrelevant experimental details unless they directly inform gene function.

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Review, either de-novo, or augment the review of an existing one. A list of deep research providers may be specified.

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Use this agent when you need to systematically review existing GO annotations for a gene and make curation decisions based on literature evidence and functional analysis. This agent should be called after seeding the SPECIES/GENE/GENE-ai-review.yaml file, which seeds each annotation with `action: PENDING`; these should all be manually reviewed.

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Use this agent when you need to review UniProt annotation rules (ARBA, UniRule) for quality, biological accuracy, and GO annotation appropriateness. This agent performs comprehensive analysis of rule condition sets, evaluates literature support, assesses taxonomic scope, and recommends curation actions.

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Curate, review, or repair ai-gene-review ModuleReview YAML documents under modules/, including pathway/module boundary setting, parts and variant modeling, annoton-level molecular functions, representative UniProt/PTN grounding, module deep-research provenance, validation, rendering, and project batch updates.

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Draft or restructure research-paper sections, refine local prose, and audit manuscript-wide consistency. Use for evidence-grounded academic writing and revision, not independent acceptance-risk review or official rebuttal management.

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Use when planning a source-grounded method overview, architecture, pipeline, system/data-flow, mechanism, or agent-workflow figure for a CS or deep-learning paper. Produces an editable figure brief before image generation or manual redrawing; not for plots, tables, or general prose.

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Use before writing custom code or a research workflow when a maintained library, tool, skill, or proven pattern may already exist. Start with local reuse and targeted evidence; broaden to external research for new dependencies, new mechanisms, or uncertain external facts.

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Search, screen, deeply read, synthesize, and publish recent research papers for a user-specified topic, window, count, quality/attention balance, and language. Use for evidence-anchored literature digests, cross-paper comparisons, original-language excerpts, Chinese explanations, guided Feishu setup, or Feishu research reports.

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Use when independently reviewing a research-paper draft before submission, running a mock top-conference panel, assessing readiness or accept/reject risk, or predicting reviewer concerns for venues such as CVPR, ICCV, ECCV, ICLR, NeurIPS, and AAAI. Does not draft or audit author responses after official reviews arrive.

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Create or revise audience-ready HTML paper presentations for lab meetings and journal clubs. Use when Codex needs source-grounded figures and tables, a fluent live-talk narrative, verified quotations, varied explanatory diagrams, presenter-paced reveals, or browser QA for evidence fidelity, interaction, responsive layout, and print.

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Use when research writing, reviews, rebuttals, or related-work planning needs academic evidence. Searches literature, screens candidate papers, audits novelty and missing work, verifies DOI/BibTeX/reference metadata and citation authenticity, and checks whether sources support the stated claims.

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Use when designing, redrawing, or validating research-paper figures and tables, including Matplotlib plots, LaTeX tables, benchmarks, captions, legends, annotations, color, and typography. Preserves exact evidence and checks rendered PDFs for clipping, overlap, and readability.

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Fierce autonomous internal co-founder. Bounded web research for evidence-backed improvements. Structured idea formulation with self-critique filter that rejects ideas not serving the goal. Auto-implements high-confidence aligned improvements, proposes medium-confidence ideas for approval. Evaluates viral coefficient, AI search visibility (GEO), and solo SaaS economics. Considers higher pursuits: employing disabled people, spiritual tech investigation, 99% wealth donation ethos.

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Research what people have discussed in the last 30 days across high-signal public platforms. Use when the user asks for `/last30days`, recent trend research, competitive intelligence, market pulse briefs, or engagement-ranked synthesis from Reddit, Hacker News, GitHub, X, YouTube, Polymarket, and similar sources.

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Broad, pre-curation evidence reconnaissance for a declared Gaia skill, intake batch, upstream repository, or proposed generic capability. Run before choosing a discovery strategy or mapping topology, to give the curator independent research leads and counterevidence. Context only: never scores, grades, ratifies, ingests, or mutates the registry. Later ev-discovery and ev-pipeline phases validate/promote any selected leads.

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Turn a verified Salesforce research packet into a concise, role-aware learning brief with clear objectives, concept sequencing, worked examples, release caveats, checks for understanding, and citations mapped to claims. Trigger keywords: teach me Salesforce, explain Salesforce concept, create learning brief, Salesforce study guide, role-based lesson. NOT for open-ended source discovery or freshness verification — use architect/salesforce-learning-research first. NOT for generating production metadata or changing an org.

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Triage the Gaia issue backlog and skill-batch intake queue. Use this skill when someone asks to: "triage issues", "clean up the issue tracker", "review the backlog", "close stale issues", "process the intake queue", "review skill-batches", "evaluate draft skill proposals", "approve or reject pending skills", "is this issue still valid?", "what's clogging the backlog?", "run a triage pass", or /gaia-triage. Covers two workstreams: (1) GitHub issue lifecycle — identifying resolved, stale, or need-more-info issues and acting on them via gh CLI; (2) skill-batch intake — evaluating draft proposals in registry-for-review/skill-batches/ and routing them toward promotion or rejection. This is the gatekeeping step before new skills enter the canonical registry; and (3) a cross-repo triage sweep — sizing, P0-P4 prioritization, umbrella/epic synthesis, and assignment across every gaia-research org repo, on the one headquarters tracker.

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Chart a too-big effort as a shared map of decision tickets on the Gaia headquarters issue tracker, then resolve them one at a time until the way to the destination is clear. Use when someone says: "this is too big for one session", "chart a map", "wayfinder map", "plan this effort", "what do we need to decide first", "open a wayfinder", "work the map", "what's on the frontier", or /wayfinder. Covers any gaia-research org repo — gaia-skill-tree, gaia-research, gaia-skill-heaven and beyond — but every map and every ticket lives on ONE tracker: gaia-research/gaia-skill-tree. This is cartography (planning an effort as decisions), NOT triage of an existing backlog — for that use /gaia-triage.

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Fuse all of a contributor's named skills into a single fusion node (suite capstone) in the registry. Use when the user says "fuse <contributor>'s skills", "create a suite for <contributor>", "build a capstone for <user>", "fuse all of <user>'s named skills", "create a suite fusion", "consolidate <contributor> into one skill", or explicitly types /gaia-fuse-full-suite. Also triggers when a contributor has accumulated 3+ named skills and the user asks what to do next with them, or when someone asks "can we make a suite from these?". This skill: collects component IDs from registry/named/<contributor>/, verifies nodes exist, researches evidence and appraises Trust Magnitude, runs `gaia dev fuse` to write the fusion node and suite manifest, validates, and opens a PR on a review/meta/ branch.

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Skippable Phase 0 of the Gaia evidence verification pipeline. Use only on declared need for higher-quality Stage-2 evidence: a promotion candidate, or a skill that gaia-meta-sweep flagged as under-evidenced. Given a skill id, source repo/context, and needed evidence types (benchmark-result, arxiv, peer-review, social-signal), it runs Firecrawl searches, scrapes top hits to markdown, and appends discovered sources into Phase 1 inputs. Missing benchmark evidence is recorded as benchmark-source candidates first, not direct scoring rows. Trigger phrases: "discover evidence", "find new evidence", "Phase 0", "run ev-discovery", "search for benchmarks/papers", "under-evidenced", "promotion candidate needs stronger proof". This is the ONLY ev-* skill that searches the web for NEW evidence; other ev-* skills aggregate or verify known sources. Requires Firecrawl to be usable (`firecrawl --status` authenticated OR FIRECRAWL_API_KEY set); skips gracefully when neither holds.

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End-to-end plan → implement → review pipeline that takes one triaged Gaia issue to a merged-ready PR, with Kill Criteria on the issue and zero follow-up debt. Use when someone says: "resolve this issue", "take #N end-to-end", "work the P0 queue", "fix and ship this issue", "run the resolver", "close out this issue properly", or /gaia-issue-resolver. Works any gaia-research org repo — gaia-skill-tree, gaia-research, gaia-skill-heaven — while the issue itself lives on the headquarters tracker, gaia-research/gaia-skill-tree. Assumes the issue is already triaged and carries a P0–P4 label; if it does not, run /gaia-triage first.

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Walks a user through connecting the judge models this plugin can use — Codex, OpenCode, OpenRouter (or any compatible endpoint: 9router, z.ai, Moonshot), Gemini — and through picking models, including "research current models for me". Use for "multi setup", "set up multi", "configure judges/reviewers/ backends", "connect 9router", "change/pick models", "onboarding", or whenever a probe shows missing backends and the user needs to know what to do about it.

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Use when the user wants to be taught an Anthropic product or feature - "teach me Claude Code", "learn Cowork", "academy lesson", "train me on MCP or the Claude API", "quiz me", "next lesson" - or asks for structured learning rather than a one-off answer. Covers Claude Code, Claude.ai, Cowork, Tag, Platform/API, and AI Fluency. Do NOT use for auditing how the user already works (use academy-review) or for mid-task help where the user just wants their task done.

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