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cccskills

Results for “compound”

264 skills · sorted by relevance

bindingdb-skill

FreeSummary

Look up compound–target binding data in BindingDB using PDB or UniProt identifiers, or search for similar chemical structures. Receive concise summaries of matching records, with full API responses saved to a file when requested.

  • Find ligands linked to a PDB identifier
  • Look up binding data for a UniProt entry
  • Search for compounds with similar structures
openai/plugins7.5KUpdated Oct 8, 2026

Generate new small molecules intended to bind a target protein with Boltz. The workflow covers cost estimation, job submission, result downloads, and ranking candidates by binding confidence or a score for improving promising molecules.

  • Generate binding candidates without an existing compound library
  • Rank generated molecules by binding confidence
  • Review solubility and permeability of promising candidates
openai/plugins7.5KUpdated Oct 8, 2026

Find the appropriate plugin for supported DeFi services, blockchain-based financial applications, using service names or native tokens. Guide installation with user confirmation, then pass the original request to the plugin, or show the available services.

  • Find the plugin for a specific DeFi service
  • Identify a service from its native token
  • Browse supported DApps
internet-court/internet-court-skill6.8KUpdated Aug 20, 2026

Document a recently solved research problem to compound methodological knowledge

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brycewang-stanford/Auto-Empirical-Research-Skills4.7KUpdated Oct 15, 2026

Transform session learnings into permanent capabilities (skills, rules, agents). Use when asked to "improve setup", "learn from sessions", "compound learnings", or "what patterns should become skills".

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parcadei/Continuous-Claude-v33.9KUpdated Jan 27, 2026

Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity scores (cosine, modified cosine), and identifying unknown compounds from spectral libraries. Best for metabolite identification, spectral matching, library searching. For full LC-MS/MS proteomics pipelines use pyopenms.

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foryourhealth111-pixel/Vibe-Skills3.7KUpdated Oct 18, 2026

Standardizes molecular structures using the ChEMBL structure pipeline for normalization and parent selection plus RDKit rdMolStandardize for explicit custom steps such as tautomer canonicalization, salt/solvent stripping, charge handling, stereochemistry handling, mixture selection, and isotope normalization. Explicitly compares ChEMBL, canSARchem, RDKit, and PubChem standardization choices. Use when preparing libraries for QSAR training, joining datasets across sources, deduplicating compound collections, or building canonical compound registries.

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GPTomics/bioSkills1.2KUpdated Aug 15, 2026

Transform session learnings into permanent capabilities (skills, rules, agents). Use when asked to "improve setup", "learn from sessions", "compound learnings", or "what patterns should become skills".

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vibeeval/vibecosystem538Updated Aug 9, 2026

Query the ZINC22 virtual compound library (CartBlanche API, billions of make-on-demand + purchasable molecules). Look up substances by ZINC ID, resolve a SMILES to its ZINC ID (exact match), inspect purchasability/catalogs, and assemble compound sets for docking. Property (MW/logP) filtering is done locally with RDKit. For bioactivity use chembl-database-bioactivity; for approved drugs use drugbank-database-access.

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jaechang-hits/SciAgent-Skills380Updated Oct 16, 2026

Query PubChem (110M+ compounds) directly via the PUG-REST/JSON API with plain `requests` — no SDK install required. Search by name/CID/SMILES/InChIKey/formula, retrieve properties (MW, XLogP, TPSA, H-bond counts), do similarity/substructure searches with async ListKey polling, fetch synonyms, descriptions, assay summaries, and download SDF/PNG. For local cheminformatics use rdkit; for bioactivity-centric workflows use chembl-database-bioactivity.

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jaechang-hits/SciAgent-Skills380Updated Oct 16, 2026

Query ChEMBL (2M+ compounds, 19M+ bioactivity measurements, 13K+ targets) via the public REST/JSON API with plain `requests` — no SDK install required. Search compounds, retrieve IC50/Ki/EC50 bioactivities, find target inhibitors, run SAR, access drug mechanism/indication data.

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jaechang-hits/SciAgent-Skills380Updated Oct 16, 2026

Parse local DrugBank XML for drug info, interactions, targets, and properties. Search by ID/name/CAS, extract DDIs with severity, map targets/enzymes/transporters, compute SMILES similarity. Primary via local XML; REST API rate-limited (3k/month dev). For live bioactivity use chembl-database-bioactivity; for compound properties use pubchem-compound-search.

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jaechang-hits/SciAgent-Skills380Updated Oct 16, 2026

Cross-reference compound IDs across 20+ databases (ChEMBL, DrugBank, PubChem, ChEBI, PDB, SureChEMBL, HMDB, DrugCentral, BindingDB) via UniChem REST API. Resolve InChIKeys to source IDs, translate between source-specific IDs, find structurally related compounds by connectivity. POST with a JSON body for all cross-reference queries; only /sources is GET. No auth required.

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jaechang-hits/SciAgent-Skills380Updated Oct 16, 2026

World-class growth strategy expertise combining Andrew Chen's marketplace and network effects wisdom, Brian Balfour's growth frameworks, Casey Winters' Pinterest/Grubhub playbooks, and the best of Silicon Valley growth thinking. Growth is not marketing. Growth is the systematic application of product, engineering, and data to create compounding user acquisition, activation, and retention. It's a mindset, not a department. Use when "growth strategy, how do we grow, acquisition strategy, retention strategy, viral growth, network effects, growth loops, product-led growth, plg, ltv cac, unit economics, growth model, flywheel, compound growth, channel strategy, referral program, activation rate, magic moment, aha moment, growth experimentation, growth, strategy, acquisition, retention, viral, network-effects, plg, loops, experimentation" mentioned.

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omer-metin/skills-for-antigravity168Updated Jan 22, 2026

用户在做长期投资/储蓄/增长决策,需要理解时间和复利的力量,或被短期波动困扰时。 语言信号:"持有多久合适"/"年化X%十年后会怎样"/"为什么长期持有比频繁交易好"/"小收益怎么变成大财富" 不适用于:短期交易决策、不需要时间维度的分析。

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kangarooking/buffett-letters-skill108Updated Apr 17, 2026

Bioactivity and small-molecule data-side catalog. Covers ChEMBL search/lookup, MolTrack compound and batch registration, HitTriage / HitDesign / PeptiHit workflows, and Curves dose-response analysis (IC50/EC50 fitting). Open this skill when the user asks about querying ChEMBL, registering or looking up compounds in MolTrack, running a hit-triage campaign, or fitting/inspecting dose-response curves.

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datagrok-ai/public74Updated Oct 19, 2026

Value investing analysis using Graham (NCAV/net-net/defensive-investor) and Buffett (economic moat/ROE/FCF) methodologies. Covers single-stock diagnostics and batch screening for both Graham cigar-butt and Buffett quality-compounder criteria. Runs cross-statement reconciliation before scoring. Data from Longbridge CLI first, MCP fallback, WebSearch only for genuine gaps. Triggers: "格雷厄姆", "巴菲特", "捡烟蒂", "烟蒂股", "NCAV", "净流动资产", "护城河", "价值投资", "安全边际", "深度价值", "撿煙蒂", "煙蒂股", "淨流動資產", "護城河", "安全邊際", "Graham", "Buffett", "cigar butt", "net-net", "NCAV screen", "moat", "value investing", "margin of safety", "deep value", "quality compounder", "價值投資", "深度價值", "防御型投资者", "防禦型投資者"

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longbridge/skills64Updated Oct 12, 2026

chembl

Free

Query the ChEMBL database web services for measured bioactivity data, compound records and calculated properties, targets, assays, mechanisms of action, drug indications and warnings. Use this skill to build curated SAR or QSAR datasets for a target, look compounds up by SMILES, InChIKey, name, or ChEMBL id, run similarity and substructure searches, and check what chemistry is already known against a protein. Also trigger when a query mentions ChEMBL ids (CHEMBL...), pChEMBL values, IC50/Ki/Kd/EC50 retrieval, assay confidence scores, or ebi.ac.uk/chembl.

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K-Dense-AI/drug-discovery-agent-skills43Updated Oct 12, 2026

Polish cut gemstones to final finish using progressive abrasive sequences. Covers pre-polish sanding, polishing compounds, lap selection, and quality assessment for both cabochons and faceted stones. Use when a cabochon or faceted stone has completed cutting and is ready for polishing, selecting the correct compound and lap for a specific species, troubleshooting a polish that will not reach full lustre (orange peel, haze, scratches), or re-polishing a stone with surface wear.

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pjt222/agent-almanac42Updated Oct 15, 2026

Turn repeatable outputs of a one-person company into compounding assets. Use when Codex needs to explain asset-compounding concepts when needed, verify prerequisite outputs, ask one question at a time, present multiple assetization priorities, and write user-confirmed outputs into `opc-doc/`.

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darker2016/workbuddy-skill-groups28Updated Aug 17, 2026

Expert-level semiconductor materials covering band theory, silicon processing, compound semiconductors, wide bandgap materials, and semiconductor device fundamentals.

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luokai0/ai-agent-skills-by-luo-kai13Updated May 6, 2026

Cross-functional what-if modeling for cascading multi-variable scenarios. Unlike single-assumption stress testing, this models compound adversity across all business functions simultaneously. Use when planning for compound downside scenarios (for example losing a key customer while a funding round slips) rather than testing one assumption.

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mouadja02/skills10Updated Oct 17, 2026

DeFi Specialist IA — Expert en finance décentralisée (Uniswap, Aave, Compound, liquidity pools, yield farming, impermanent loss)

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ziri22/agency-roster6Updated Jul 1, 2026

audit

Free

Productivity analyst that maps your workflow, scores tasks, and builds a prioritized automation plan. Use when: (1) "audit my workflow", "what should I automate?", "productivity review", (2) Starting a new project and need to identify high-leverage tasks, (3) Feeling overwhelmed and need to prioritize, (4) After /compounder surfaces new friction or patterns. Reads compounder insights when available. Outputs to system/audit-report.md.

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vxcozy/architect-system5Updated Feb 13, 2026