Results for “loop”

Use only after explicit Codex `$superloopy:superloopy-backend` or Claude Code `/superloopy:superloopy-backend` invocation, a backend task beginning with leading `loopy` or `루피`, or an active Superloopy loop routes backend work here. Relevant work includes backend application boundaries, APIs, persistence, migrations, transactions, background jobs, caches, events, reliability, security, and runtime database-agent tools. Plain API, server, database, SQL, or agent vocabulary does not activate this workflow.

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Use only after explicit Codex `$superloopy:superloopy-backend` or Claude Code `/superloopy:superloopy-backend` invocation, a backend task beginning with leading `loopy` or `루피`, or an active Superloopy loop routes backend work here. Relevant work includes backend application boundaries, APIs, persistence, migrations, transactions, background jobs, caches, events, reliability, security, and runtime database-agent tools. Plain API, server, database, SQL, or agent vocabulary does not activate this workflow.

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Use only after explicit Codex `$superloopy:superloopy-frontend` or Claude Code `/superloopy:superloopy-frontend` invocation for supported screen-based application UI across browser-hosted Web, interactive deployed content-led Web, desktop, mobile/tablet, embedded/hybrid, Qt, custom-rendered, or mixed targets, such a task started with a leading `loopy` or `루피`, or an active Superloopy loop explicitly routing it here. Do not activate from UI, frontend, desktop, mobile, or framework vocabulary alone, or for TV, wearable, XR, automotive, game UI, TUI, static media/document artifacts, or non-UI work.

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Calls significant loops from protein-directed and targeted 3C assays (HiChIP, PLAC-seq, Capture Hi-C/PCHi-C, ChIA-PET) where the contact background is peak-anchored and coverage-biased, so generic Hi-C loop callers (cooltools dots, Juicer HiCCUPS) use the wrong null. Covers FitHiChIP (config-driven coverage+distance-decay spline regression, peak-to-peak vs peak-to-all foreground, loose vs stringent background, coverage vs ICE bias), MAPS (positive Poisson regression on bias factors for PLAC-seq/HiChIP), hichipper (restriction-site-distance bias model + library QC), CHiCAGO (Delaporte two-component Brownian+technical background for asymmetric bait x other-end Capture Hi-C), the with/without separate-ChIP anchor decision, and differential loops via diffloop. Use when calling loops from HiChIP/PLAC-seq/Capture Hi-C, choosing FitHiChIP/MAPS/CHiCAGO, picking peak-to-all vs peak-to-peak, setting the loop FDR, supplying ChIP peaks as anchors, QCing a HiChIP library, or comparing loops between conditions.

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Automatically infer loop invariants for code verification and correctness proofs. Use when analyzing loops to identify properties that hold throughout execution, generating assertions for verification, proving loop correctness, or documenting loop behavior. Supports Python, Java, C/C++, and language-agnostic analysis. Generates invariants as code assertions (assert statements). Triggers when users ask to infer invariants, find loop properties, generate loop assertions, prove loop correctness, or verify loop behavior.

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Automated iterative agent runner for spec-based development in Kiro. Wraps kiro-cli in a self-correcting bash loop that picks up tasks from a Kiro spec, implements them one at a time, verifies against exit criteria, and accumulates corrections and codebase patterns across iterations. Use this skill when the user mentions "ralph loop", "ralph", "spec loop", "iterative spec runner", "run my spec tasks automatically", "kiro spec automation", "self-correcting agent loop", "implement spec tasks in a loop", "run kiro-cli in a loop", "automated task implementation", or wants to drive a Kiro spec to completion through repeated agent iterations. Also use when the user wants to set up, configure, troubleshoot, or understand the Ralph Loop workflow — including progress tracking, corrections, codebase patterns, timing logs, and the summary dashboard.

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设计或审计完整 Loop 系统的组件架构: 5 大组件 + 1 根脊柱。 当用户需要搭建一个完整的 (而非最小可用的) loop 系统、或审计现有系统的组件完整性时使用。 不适用于: 最小可用 loop 的设计、或单次任务的自动化。 关键 trigger: "设计一个完整的 loop 系统"、"我的 loop 缺什么"、"loop 系统怎么组织"。

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判断一个任务是否值得做成 Loop 的四条决策标准。 当用户在纠结"这件事要不要自动化"、"该不该用 loop"、或"为什么我的 loop 得不偿失"时使用。 不适用于: 已经决定要做 loop 后的设计阶段、或一次性任务。 关键 trigger: "这件事值得做 loop 吗"、"该不该自动化"、"loop 成本太高怎么办"。

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Write and harden reusable agent-loop specification documents for biomechanics, data science, and vailá coding work. Use when the user says `/preto-loop`, asks to write/create/forge/specify/document an agent loop, turn an iterative vailá task into an autonomous loop, make an overnight loop, or design a biomechanics, data-pipeline, markerless-tracking, testing, refactoring, or performance loop. Include external verification, scientific validity, GUI/CLI parity, reproducibility, memory, guardrails, and named terminal states. Do not use merely to repeat a fixed scheduled prompt, execute an existing loop, or create unrelated documents.

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Calls significant loops from protein-directed and targeted 3C assays (HiChIP, PLAC-seq, Capture Hi-C/PCHi-C, ChIA-PET) where the contact background is peak-anchored and coverage-biased, so generic Hi-C loop callers (cooltools dots, Juicer HiCCUPS) use the wrong null. Covers FitHiChIP (config-driven coverage+distance-decay spline regression, peak-to-peak vs peak-to-all foreground, loose vs stringent background, coverage vs ICE bias), MAPS (positive Poisson regression on bias factors for PLAC-seq/HiChIP), hichipper (restriction-site-distance bias model + library QC), CHiCAGO (Delaporte two-component Brownian+technical background for asymmetric bait x other-end Capture Hi-C), the with/without separate-ChIP anchor decision, and differential loops via diffloop. Use when calling loops from HiChIP/PLAC-seq/Capture Hi-C, choosing FitHiChIP/MAPS/CHiCAGO, picking peak-to-all vs peak-to-peak, setting the loop FDR, supplying ChIP peaks as anchors, QCing a HiChIP library, or comparing loops between conditions.

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Calls significant loops from protein-directed and targeted 3C assays (HiChIP, PLAC-seq, Capture Hi-C/PCHi-C, ChIA-PET) where the contact background is peak-anchored and coverage-biased, so generic Hi-C loop callers (cooltools dots, Juicer HiCCUPS) use the wrong null. Covers FitHiChIP (config-driven coverage+distance-decay spline regression, peak-to-peak vs peak-to-all foreground, loose vs stringent background, coverage vs ICE bias), MAPS (positive Poisson regression on bias factors for PLAC-seq/HiChIP), hichipper (restriction-site-distance bias model + library QC), CHiCAGO (Delaporte two-component Brownian+technical background for asymmetric bait x other-end Capture Hi-C), the with/without separate-ChIP anchor decision, and differential loops via diffloop. Use when calling loops from HiChIP/PLAC-seq/Capture Hi-C, choosing FitHiChIP/MAPS/CHiCAGO, picking peak-to-all vs peak-to-peak, setting the loop FDR, supplying ChIP peaks as anchors, QCing a HiChIP library, or comparing loops between conditions.

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Find repeated engineering tasks and turn them into agent workflows with clear checks, stopping rules, and approval boundaries. Compare published workflows, adapt suitable examples, or review existing ones for weak verification and uncontrolled repetition.

• Find recurring tasks in code and conversation history
• Compare and adapt published agent workflows
• Review workflows for weak checks and missing stop rules

Load project rules before an agent starts work, then apply restrictions to file edits, tests, pushes, and merges. Check pause settings and identify actions that require human approval.

• Applying project rules before automated work
• Checking protected paths before editing
• Reviewing push and merge conditions

Detects focal chromatin loops (point interactions / corner-dots) in balanced Hi-C and Micro-C contact maps and aggregates/validates a loop set. Covers de-novo calling with cooltools dots (HiCCUPS-style 4-background local enrichment with lambda-chunked FDR), chromosight (template-correlation), and Mustache (scale-space blob detection); aggregate peak analysis (APA) via cooltools pileup for confirmation; the depth/resolution prerequisite (de-novo needs ~5-10kb resolution = hundreds of millions to billions of valid pairs); consensus across callers and convergent-CTCF support as validation; and differential loops via union anchors plus chromosight quantify. Use when calling chromatin loops or dots from a cooler, deciding whether a map is deep enough to call de-novo vs running APA on known CTCF/cohesin anchors, building an aggregate peak pileup, comparing loops across conditions, or validating loop calls. For HiChIP/PLAC-seq/PCHi-C protein-anchored data use FitHiChIP/MAPS, not dots.

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Start a safe, governed autonomous loop from a plain-language goal. Use when the user says /coco-loop, "run an autonomous loop", "keep my build green for N hours", "work on X autonomously for a while", or wants a bounded self-improving loop that proposes fixes and never commits on its own. Turns a vague goal into a readable charter the user confirms, then arms and runs the loop propose-only under the coco-loops governance framework.

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Design and review autonomous or semi-autonomous agent loops — systems where an agent prompts itself, runs on a schedule or event, and iterates toward a goal without a human at the keyboard. Use this whenever the user wants to build, design, harden, or audit any kind of self-running agent, agentic workflow, control loop, background worker, cron/heartbeat/webhook-driven agent, "Ralph loop", auto-PR-fixer, monitoring agent, or any long-running task that should keep going on its own until done. Trigger this even when the user says "agentic workflow", "automation that runs itself", "an agent that keeps trying until X", or "make my agent stop running away / burning tokens" without using the word "loop". Also use it to review an existing loop's stopping conditions, guardrails, verification, and escalation paths.

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反復レビュー・ループ(codex-review-loop・fable-review-loop・opus-review-loop)が共有する判断ロジックの正本。起動可否ゲート・レビュアーの正体に依存しない大前提・常設観点・レビュー依頼に含める内容と含めてはならない内容・照合仕分け・終了判定・報告を定義する。内部専用でユーザーが直接使うものではない。

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Detects focal chromatin loops (point interactions / corner-dots) in balanced Hi-C and Micro-C contact maps and aggregates/validates a loop set. Covers de-novo calling with cooltools dots (HiCCUPS-style 4-background local enrichment with lambda-chunked FDR), chromosight (template-correlation), and Mustache (scale-space blob detection); aggregate peak analysis (APA) via cooltools pileup for confirmation; the depth/resolution prerequisite (de-novo needs ~5-10kb resolution = hundreds of millions to billions of valid pairs); consensus across callers and convergent-CTCF support as validation; and differential loops via union anchors plus chromosight quantify. Use when calling chromatin loops or dots from a cooler, deciding whether a map is deep enough to call de-novo vs running APA on known CTCF/cohesin anchors, building an aggregate peak pileup, comparing loops across conditions, or validating loop calls. For HiChIP/PLAC-seq/PCHi-C protein-anchored data use FitHiChIP/MAPS, not dots.

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Detects focal chromatin loops (point interactions / corner-dots) in balanced Hi-C and Micro-C contact maps and aggregates/validates a loop set. Covers de-novo calling with cooltools dots (HiCCUPS-style 4-background local enrichment with lambda-chunked FDR), chromosight (template-correlation), and Mustache (scale-space blob detection); aggregate peak analysis (APA) via cooltools pileup for confirmation; the depth/resolution prerequisite (de-novo needs ~5-10kb resolution = hundreds of millions to billions of valid pairs); consensus across callers and convergent-CTCF support as validation; and differential loops via union anchors plus chromosight quantify. Use when calling chromatin loops or dots from a cooler, deciding whether a map is deep enough to call de-novo vs running APA on known CTCF/cohesin anchors, building an aggregate peak pileup, comparing loops across conditions, or validating loop calls. For HiChIP/PLAC-seq/PCHi-C protein-anchored data use FitHiChIP/MAPS, not dots.

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Run Ruflo background workers on a recurring schedule within a Claude Code session. Choose tasks such as security analysis, documentation, or test coverage analysis, check their status, and stop the loop after repeated reports of no new work.

• Run recurring security analysis
• Periodically check test coverage gaps
• Repeat code analysis and documentation tasks

Design recurring marketing workflows for SEO checks, ad reviews, and churn monitoring. Define when an agent checks, when it acts, what requires human approval, and when it stops, using reusable workflow templates.

• Set up a weekly SEO review
• Schedule recurring ad fatigue checks
• Monitor customer churn signals

Coordinate AI research from literature review and hypothesis testing to findings and paper drafts. The skill alternates focused experiments with broader reflection, maintains project records, and directs specialized skills to carry out research tasks.

• Turning a research question into testable hypotheses
• Managing repeated experiments across multiple hypotheses
• Resuming research from recorded findings and project state

Check estimated token usage against daily limits before and after each automated loop run. Switch to reporting only, exit early when required, and record run outcomes so repeated agent work stays within configured limits.

• Checking daily token usage before a run
• Switching to reporting only near budget limits
• Exiting early when there is no actionable work

Drafts a token budget extension request when an autonomous loop approaches its daily limit and high priority work remains. Uses logged results and remaining issues to justify the request, then pauses until a human increases the budget.

• Requesting extra budget for remaining critical work
• Summarizing daily token spending and successful actions
• Preparing a budget request for a human maintainer