Results for “correlation”

Aligns and QCs methylated-RNA-immunoprecipitation (MeRIP / m6A-seq) IP and input libraries using STAR or HISAT2 splice-aware mapping, samtools sort/index, IP/input matched-pair tracking, antibody-lot metadata recording, replicate concordance via deepTools multiBamSummary + plotCorrelation, IP enrichment QC via plotFingerprint and per-transcript IP/input ratio distributions, library-complexity saturation curves via PreSeq, and the explicit do-NOT-deduplicate convention for standard non-UMI MeRIP. Use when preparing paired IP and input BAM files for exomePeak2 / MeTPeak / MACS3 peak calling, evaluating MeRIP replicate concordance and IP enrichment, deciding whether to deduplicate (standard MeRIP typically NOT), choosing genome-vs-transcriptome alignment for downstream peak vs m6Anet workflows, recording antibody clone and lot metadata for cross-batch reconciliation, detecting failed IPs via saturation curves and IP/input distribution shape, or generating IP-over-Input bigWig tracks for visualisation.

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Smart triggered RF capture on NI USRP radios with Wireless Testbench — record only when a signal of interest appears, not continuously (triggered spectrum sensing). Use energy detection to capture when signal power rises above the noise floor, or preamble detection to cross-correlate against a known sequence (WLAN L-LTF, 5G NR PSS/SSS, LTE PSS, Zadoff-Chu, custom protocols) and capture only when that protocol's preamble is detected. Use when implementing triggered (wake-on-signal) capture or spectrum sensing, capturing protocol-based signals via cross-correlation, calibrating detection thresholds (plotDetectionSignals / plotThreshold), scanning frequency bands for activity, or building transmit-then-detect workflows.

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Register 3-D point clouds using ICP, NDT, LOAM, FGR, phase correlation, and CPD algorithms. Use when registering or aligning 3-D point clouds, choosing a registration algorithm, tuning registration parameters, preprocessing point clouds for registration or combining point clouds after registration.

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Zenith performs gene set analysis on the result of differential expression using linear (mixed) modeling with dream by considering the correlation between gene expression traits. This package implements the camera method from the limma package proposed by Wu and Smyth (2012). Zenith is a simple extension of camera to be compatible with linear mixed models implemented in variancePartition::dream().

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mirTarRnaSeq R package can be used for interactive mRNA miRNA sequencing statistical analysis. This package utilizes expression or differential expression mRNA and miRNA sequencing results and performs interactive correlation and various GLMs (Regular GLM, Multivariate GLM, and Interaction GLMs ) analysis between mRNA and miRNA expriments. These experiments can be time point experiments, and or condition expriments.

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Statistical and computational method to analyze the co-expression of gene pairs at single cell level. It provides the foundation for single-cell gene interactome analysis. The basic idea is studying the zero UMI counts' distribution instead of focusing on positive counts; this is done with a generalized contingency tables framework. COTAN can effectively assess the correlated or anti-correlated expression of gene pairs. It provides a numerical index related to the correlation and an approximate

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This package implements functions to find influential TF and target based on different input type. It have five module: Multi-peak multi-gene annotaion(mmPeakAnno module), Calculate regulation potential(calcRP module), Find influential Target based on ChIP-Seq and RNA-Seq data(Find influential Target module), Find influential TF based on different input(Find influential TF module), Calculate peak-gene or peak-peak correlation(peakGeneCor module). And there are also some other useful function lik

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Implements structured diagnostics, correlation and justified metrics or traces; not incident investigation or a mandatory telemetry platform.

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Define explicit outcome measurement contracts, baseline evidence, query revisions, guardrails, and post-release product value reviews without confusing correlation with causal ROI. (triggers: `product measurement contract`, `product value review`)

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Configure structured logging with Pino, Prometheus metrics, and health checks for NestJS services. Use when adding JSON logging, request tracing with correlation IDs, Prometheus metric endpoints, or liveness/readiness health checks.

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Designs and reviews detections from telemetry prerequisites, correlation logic, Sigma metadata, severity, status, and benign cases. Use for detection rules, Sigma review, analytic coverage, or tuning; not generic logging advice or live deployment.

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Enforce structured JSON logging, OpenTelemetry distributed tracing, and RED metrics across backend services. Use when adding request correlation, setting up tracing spans, defining SLO burn-rate alerts, or instrumenting middleware.

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Security-focused differential code review with blast radius analysis, risk-adaptive depth (DEEP/FOCUSED/SURGICAL), git history correlation, and structured finding format. Adapted from Trail of Bits. Use when reviewing PRs, commits, or code changes for security implications.

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Braintrust tracing for Claude Code - hook architecture, sub-agent correlation, debugging

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Debugging workflows for Python (pdb, debugpy), Go (delve), Rust (lldb), and Node.js, including container debugging (kubectl debug, ephemeral containers) and production-safe debugging techniques with distributed tracing and correlation IDs. Use when setting breakpoints, debugging containers/pods, remote debugging, or production debugging.

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Passive and active reconnaissance, subdomain enumeration, DNS analysis, technology fingerprinting, and OSINT data correlation for authorized security assessments

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IOC extraction, threat intelligence correlation, MITRE ATT&CK mapping, hunt hypothesis generation, and detection rule creation

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Systematic exploratory data analysis. Activate when a dataset needs profiling — structure check, nulls, outliers, distributions, correlations — before deeper analysis begins.

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Use when you need to implement or improve Java logging and observability — including selecting SLF4J with Logback/Log4j2, applying proper log levels (ERROR, WARN, INFO, DEBUG, TRACE), parameterized logging, correlation context, secure logging without sensitive data exposure, environment-specific configuration, log aggregation, monitoring, and alerting. This should trigger for requests such as Improve logging; Apply logging; Refactor logging; Add logging support; Review SLF4J structured logging in Java code. Part of Plinth Toolkit

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Observability patterns for Python applications. Triggers on: logging, metrics, tracing, opentelemetry, prometheus, observability, monitoring, structlog, correlation id.

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Professional trading charts including candlesticks, equity curves, drawdowns, correlation heatmaps, and return distributions

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NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.

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Comprehensive cryptocurrency market research and analysis using specialized AI agents. Analyzes market data, price trends, news sentiment, technical indicators, macro correlations, and investment opportunities. Use when researching cryptocurrencies, analyzing crypto markets, evaluating digital assets, or investigating blockchain projects like Bitcoin, Ethereum, Solana, etc.

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Use when hunting threats or engineering detections — ATT&CK Detection-Strategies, Sigma + correlation with Detection-as-Code CI, Windows endpoint hunting (Sysmon/ETW/LSASS/LOLBins), network C2 hunting (JA4+, beaconing, DNS tunneling), cloud-identity hunting, Atomic Red Team purple-team validation

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