362 skills · sorted by relevance
Run a bounded AssemblyAI pre-recorded smoke test with explicit model fallback and safe output. Use when proving a new integration. Trigger with "AssemblyAI hello world", "first AssemblyAI transcript", or "AssemblyAI smoke test".
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Analyze and design a typed AssemblyAI adapter that isolates SDK drift, regional routing, polling, and streaming lifecycles. Use when integrating an official SDK. Trigger with "AssemblyAI SDK pattern", "AssemblyAI adapter", or "wrap AssemblyAI".
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Configure AssemblyAI keys, regional endpoints, and server-versus-browser authentication safely. Use when installing or authenticating an integration. Trigger with "AssemblyAI auth", "AssemblyAI API key", or "AssemblyAI endpoint setup".
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Analyze and control AssemblyAI account request limits, concurrency, backoff, and admission queues. Use when handling 429s or planning throughput. Trigger with "AssemblyAI rate limit", "AssemblyAI concurrency", or "AssemblyAI backoff".
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Analyze and control AssemblyAI model, feature, duration, retry, concurrency, and LLM Gateway spend using measured usage. Use when setting budgets or investigating anomalies. Trigger with "AssemblyAI cost", "AssemblyAI billing", or "reduce AssemblyAI spend".
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Evaluates genome assembly quality across the three orthogonal axes - contiguity (QUAST auN/NG50/NGx, not bare N50), completeness (BUSCO/compleasm gene-space plus Merqury k-mer completeness), and correctness (reference-free Merqury QV, Inspector/CRAQ structural errors, asmgene false-duplication/collapse). Covers why N50 is the most-gamed metric, why QV measured on the polishing reads is circular, distinguishing uncollapsed haplotigs from real WGD, and the EBP/VGP 6.C.Q40 standard. Use when judging whether an assembly is good enough to annotate or publish, comparing assemblers, diagnosing a fragmented or duplicated assembly, or assessing a phased diploid assembly.
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Evaluates genome assembly quality across the three orthogonal axes - contiguity (QUAST auN/NG50/NGx, not bare N50), completeness (BUSCO/compleasm gene-space plus Merqury k-mer completeness), and correctness (reference-free Merqury QV, Inspector/CRAQ structural errors, asmgene false-duplication/collapse). Covers why N50 is the most-gamed metric, why QV measured on the polishing reads is circular, distinguishing uncollapsed haplotigs from real WGD, and the EBP/VGP 6.C.Q40 standard. Use when judging whether an assembly is good enough to annotate or publish, comparing assemblers, diagnosing a fragmented or duplicated assembly, or assessing a phased diploid assembly.
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Evaluates genome assembly quality across the three orthogonal axes - contiguity (QUAST auN/NG50/NGx, not bare N50), completeness (BUSCO/compleasm gene-space plus Merqury k-mer completeness), and correctness (reference-free Merqury QV, Inspector/CRAQ structural errors, asmgene false-duplication/collapse). Covers why N50 is the most-gamed metric, why QV measured on the polishing reads is circular, distinguishing uncollapsed haplotigs from real WGD, and the EBP/VGP 6.C.Q40 standard. Use when judging whether an assembly is good enough to annotate or publish, comparing assemblers, diagnosing a fragmented or duplicated assembly, or assessing a phased diploid assembly.
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Helps compile Rust and C into WebAssembly for browsers and servers. Covers JavaScript integration, WASI interfaces for accessing system resources, typed component connections, and practical ways to tune binary size, execution speed, and memory use.
Build an AssemblyAI local loop with synthetic fixtures, recorded contracts, and an optional bounded live lane. Use when developing without exposing audio or uncontrolled credits. Trigger with "AssemblyAI local dev" or "mock AssemblyAI".
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Analyze and apply AssemblyAI secret, region, consent, retention, deletion, and model-training controls. Use when reviewing security or regulated speech workflows. Trigger with "AssemblyAI security", "AssemblyAI privacy", or "data retention".
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Analyze and operate an AssemblyAI Streaming v3 session with safe tokens, audio framing, turn handling, and explicit termination. Use when building live captions or voice agents. Trigger with "AssemblyAI streaming", "AssemblyAI v3 WebSocket", or "live transcript".
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Analyze and process AssemblyAI pre-recorded and streaming webhooks with authentication, fast acknowledgment, deduplication, and safe retrieval. Use when implementing event-driven completion. Trigger with "AssemblyAI webhook" or "AssemblyAI callback".
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Deploy AssemblyAI workers, Streaming v3 token services, and authenticated callback receivers with reversible controls. Use when shipping cloud infrastructure. Trigger with "deploy AssemblyAI" or "AssemblyAI webhook deployment".
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Analyze and tune AssemblyAI model choice, audio delivery, polling, Streaming v3 turns, concurrency, and downstream work. Use when pursuing measured latency or throughput goals. Trigger with "tune AssemblyAI" or "AssemblyAI latency".
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Analyze and design an AssemblyAI architecture spanning pre-recorded jobs, Streaming v3, LLM Gateway, callbacks, queues, retention, and audit evidence. Use when performing system design or review. Trigger with "AssemblyAI architecture" or "design AssemblyAI pipeline".
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Assembles genomes de novo from noisy long reads (Oxford Nanopore R9/R10/Dorado, PacBio CLR) with Flye (repeat graph), Canu (correct-trim-assemble OLC), NextDenovo, Shasta, Raven, wtdbg2, or miniasm, and reconciles bacterial assemblies into a consensus with Trycycler/Autocycler. Covers matching the input flag to the basecaller era (--nano-hq vs --nano-raw), why a raw long-read assembly is contiguous but low-QV and not finished until polished, haplotig false-duplication and purge_dups, coverage and read-N50 as non-substitutable inputs, and mid-read adapter de-chimerization. Use when assembling a bacterial or eukaryotic genome from ONT or PacBio noisy reads, choosing a long-read assembler, or diagnosing an over-collapsed or duplicated assembly. For PacBio HiFi use hifi-assembly instead.
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Decides whether and how to polish a draft genome assembly to raise consensus accuracy (QV) with read-type-matched tools - Racon and medaka (ONT consensus), dorado polish, Polypolish and pypolca (Illumina, repeat-aware), Pilon (legacy short-read), NextPolish/NextPolish2, Hapo-G (haplotype-aware), ntEdit, and DeepPolisher/PEPPER-Margin-DeepVariant for human. Covers the do-not-polish-HiFi rule, the medaka basecaller-model footgun, held-out Merqury QV as the only honest stop signal, and the haplotype-collapse trap. Use when correcting homopolymer indels or residual SNPs in a long-read assembly, deciding if a HiFi assembly needs polishing, or choosing an ONT vs hybrid vs short-read polishing chain.
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Assess genome assembly quality using QUAST for contiguity metrics and BUSCO for completeness. Essential for evaluating assembly success and comparing assemblers. Use when evaluating assembly completeness and quality.
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Assembly programming and low-level debugging skill for reading, writing, explaining, optimizing, and reviewing assembly across x86, x86-64, ARM, AArch64, RISC-V, calling conventions, ABI boundaries, inline assembly, disassembly, stack frames, registers, and binary-level behavior. Use for .s/.asm files, compiler output, reverse-engineering snippets, low-level performance, and crash analysis.
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Decides whether and how to polish a draft genome assembly to raise consensus accuracy (QV) with read-type-matched tools - Racon and medaka (ONT consensus), dorado polish, Polypolish and pypolca (Illumina, repeat-aware), Pilon (legacy short-read), NextPolish/NextPolish2, Hapo-G (haplotype-aware), ntEdit, and DeepPolisher/PEPPER-Margin-DeepVariant for human. Covers the do-not-polish-HiFi rule, the medaka basecaller-model footgun, held-out Merqury QV as the only honest stop signal, and the haplotype-collapse trap. Use when correcting homopolymer indels or residual SNPs in a long-read assembly, deciding if a HiFi assembly needs polishing, or choosing an ONT vs hybrid vs short-read polishing chain.
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Assembles genomes de novo from noisy long reads (Oxford Nanopore R9/R10/Dorado, PacBio CLR) with Flye (repeat graph), Canu (correct-trim-assemble OLC), NextDenovo, Shasta, Raven, wtdbg2, or miniasm, and reconciles bacterial assemblies into a consensus with Trycycler/Autocycler. Covers matching the input flag to the basecaller era (--nano-hq vs --nano-raw), why a raw long-read assembly is contiguous but low-QV and not finished until polished, haplotig false-duplication and purge_dups, coverage and read-N50 as non-substitutable inputs, and mid-read adapter de-chimerization. Use when assembling a bacterial or eukaryotic genome from ONT or PacBio noisy reads, choosing a long-read assembler, or diagnosing an over-collapsed or duplicated assembly. For PacBio HiFi use hifi-assembly instead.
The English summary is being prepared. Showing the original description.
Decides whether and how to polish a draft genome assembly to raise consensus accuracy (QV) with read-type-matched tools - Racon and medaka (ONT consensus), dorado polish, Polypolish and pypolca (Illumina, repeat-aware), Pilon (legacy short-read), NextPolish/NextPolish2, Hapo-G (haplotype-aware), ntEdit, and DeepPolisher/PEPPER-Margin-DeepVariant for human. Covers the do-not-polish-HiFi rule, the medaka basecaller-model footgun, held-out Merqury QV as the only honest stop signal, and the haplotype-collapse trap. Use when correcting homopolymer indels or residual SNPs in a long-read assembly, deciding if a HiFi assembly needs polishing, or choosing an ONT vs hybrid vs short-read polishing chain.
The English summary is being prepared. Showing the original description.
Assembles genomes de novo from noisy long reads (Oxford Nanopore R9/R10/Dorado, PacBio CLR) with Flye (repeat graph), Canu (correct-trim-assemble OLC), NextDenovo, Shasta, Raven, wtdbg2, or miniasm, and reconciles bacterial assemblies into a consensus with Trycycler/Autocycler. Covers matching the input flag to the basecaller era (--nano-hq vs --nano-raw), why a raw long-read assembly is contiguous but low-QV and not finished until polished, haplotig false-duplication and purge_dups, coverage and read-N50 as non-substitutable inputs, and mid-read adapter de-chimerization. Use when assembling a bacterial or eukaryotic genome from ONT or PacBio noisy reads, choosing a long-read assembler, or diagnosing an over-collapsed or duplicated assembly. For PacBio HiFi use hifi-assembly instead.
The English summary is being prepared. Showing the original description.