리서치·학습 스킬

Query ProteomeXchange through its PROXI API to inspect datasets, libraries, proteins, peptide forms, and spectra. Receive concise summaries focused on a dataset or identifier, and save complete responses when more detail is needed.

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• Inspect a dataset by its identifier
• Check proteins, peptide forms, and spectrum matches
• Retrieve spectra and USI identifier examples

Turn broad life sciences questions into focused research plans. Resolve names and identifiers for genes, diseases, or compounds, select relevant research skills, and combine evidence into a concise answer that explains uncertainty and useful follow-up analyses.

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• Reviewing evidence linking a gene to a disease
• Combining evidence about a variant and its associated traits
• Researching protein structure, function, and drug interactions

Retrieve focused genome, assembly, and taxonomy metadata from NCBI Datasets v2, a biological data service. Get concise Markdown summaries by default, with raw JSON or text available when requested.

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• Checking genome metadata for a specific organism
• Looking up an assembly by its accession identifier
• Checking taxonomy information by taxon ID

Search NCBI databases for literature, genes, proteins, nucleotide records, and GEO dataset descriptions. Retrieve records, summaries, or related entries through Entrez, NCBI’s database access service, and receive concise results with links to cited publications.

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• Searching PubMed for papers on a specific topic
• Retrieving gene or protein records
• Finding publications related to GEO records

Query the ChEMBL API for molecules, biological targets, activity records, and mechanisms of action. Search by text or look up an identifier, then receive concise summaries or JSON output when machine-readable results are needed.

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• Look up a molecule or target by its ChEMBL identifier
• Retrieve activity records for a molecule
• Review mechanisms of action

Look up species information and archived genetic variants in the European Variation Archive. Uses focused API requests to return concise Markdown summaries, with raw JSON available when structured data is needed for further processing.

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• Check which species are listed in EVA
• Look up an archived variant by its identifier
• Inspect variants within a small genomic region

Search nucleotide or protein sequences with NCBI BLAST, check job progress, and get compact summaries of the top matches. Use the job ID to retrieve results later, or request raw output saved to a file.

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• Find sequences similar to a nucleotide or protein sequence
• Check the status of a submitted BLAST job
• Review the top matches in a compact summary

Retrieve concise Ensembl summaries for gene identifiers, genomic regions, links to related database records, and genetic variants. Use a bundled Python script to request data, limit displayed results, or save the full response when needed.

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• Look up information for an Ensembl gene ID
• Find genes overlapping a genomic region
• Check links to related database records

Search EFO, a structured vocabulary, look up individual terms, and retrieve their immediate children or broader descendants through OLS4. Get concise summaries for term identification and hierarchy exploration, with full responses saved when needed.

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• Find EFO terms related to a search word
• Look up details for a specific EFO term
• Explore immediate children and broader descendants

Look up one genetic variant in BioBank Japan and get a concise summary of its associations with diseases and traits. Accepts rsIDs or genome coordinates, converts the query as needed, and can save complete results.

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• Check disease and trait associations for one variant
• Look up a variant using an rsID or genome coordinates
• Save complete association results for further analysis

Look up existing predictions and protein information in the AlphaFold Protein Structure Database. Retrieve concise structure metadata, UniProt summaries, sequence summaries, and annotations, with an option to save the full response for later inspection.

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• Look up an existing protein structure prediction
• Check a UniProt summary
• Review sequence summaries and annotations

Retrieve concise metadata for preprints, papers shared before formal publication, from bioRxiv and medRxiv. Look up records by date range or DOI, check links to published papers, and save full responses when needed.

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• Review preprint metadata for a specified date range
• Look up a preprint by DOI
• Check a preprint's link to a published paper

Retrieve public eQTL Catalogue association data, linking genes and genetic variants, along with study metadata. Filter requests to specific identifiers and receive concise Markdown summaries or raw JSON when machine-readable output is requested.

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• Look up association data for a specific gene
• Filter association results by a genetic variant
• Check study metadata in the public catalogue

Query Bgee for healthy wild-type gene expression metadata and receive concise summaries. The skill supports lookups that account for relationships between biological terms, keeps requests small, and saves raw results only when requested.

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• Looking up healthy wild-type expression metadata
• Searching with relationships between biological terms
• Checking whether matching data exists

Search HMDB for metabolites, proteins, diseases, or pathways and receive concise Markdown summaries. Keep searches focused on one category, with an option to save the full response when more detail is needed.

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• Look up a metabolite such as serotonin
• Find pathways related to glycolysis
• Search for proteins or diseases

Retrieve concise information about microbiome studies, samples, and habitat metadata from MGnify. Narrow requests by study or sample identifier or biome, a type of biological environment, and receive readable summaries or JSON for further processing.

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• Looking up a microbiome study by its identifier
• Summarizing metadata for a specific sample
• Browsing biological environment categories

Retrieve concise summaries from GWAS Catalog, a resource for studies linking genetic variants to traits. Look up studies, associations, genes, variants, and publications, with JSON output or saved full responses when needed.

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• Finding GWAS studies related to asthma
• Checking associations mapped to BRCA1
• Looking up genetic variants and related publications

Retrieve concise Genebass summaries linking a selected gene's variant group to traits across a broad association scan. Specify one Ensembl gene ID, choose a variant group, and control result counts, with optional JSON output.

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• Review trait associations for a single gene
• Request associations for a chosen variant group
• Expand the number of associations returned

Find studies in MetaboLights, a database for research on metabolites, and retrieve study metadata by accession number. Receive concise Markdown summaries by default, with raw JSON available when you need machine-readable results.

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• Browse studies registered in MetaboLights
• Look up a study by its MTBLS accession
• Get a concise summary of study metadata

Search BioStudies and ArrayExpress by keywords or retrieve study information using an accession, a study’s registration identifier. Returns concise summaries and can save complete API responses to a file for further inspection.

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• Search for studies related to RNA
• Find single-cell studies in ArrayExpress
• Retrieve study details by accession

Search ClinicalTrials.gov studies by condition and recruitment status, then receive concise summaries. Use the same client to inspect API field definitions, allowed values, search areas, and field statistics, with an option to save raw responses.

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• Finding recruiting studies for a specific condition
• Getting concise summaries of clinical trial search results
• Checking API field definitions and allowed values

Retrieve public collection and dataset metadata from CELLxGENE Discover and turn it into concise summaries. Use targeted collection lookups to review single-cell research data, with raw JSON available when machine-readable output is needed.

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• Review a specific single-cell data collection
• Explore available public collections
• Get collection metadata as JSON

Search ClinVar and NCBI Variation for genetic variants, or look up records using VCV, RCV, SCV, and RefSNP identifiers. Get concise summaries, check identifier mappings, and save full JSON responses when needed.

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• Searching ClinVar for a genetic variant
• Looking up VCV, RCV, SCV, or RefSNP records
• Checking mappings between variant identifiers

Retrieve gene data, search downloads, and tissue or cell-line pages from Human Protein Atlas. Get concise summaries by default, with raw JSON or HTML saved to a file only when requested.

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• Look up gene data by Ensembl ID
• Review Human Protein Atlas search results
• Check tissue and cell-line pages