Philipp J. Thoss

Install skills, agents, and teams from agent-almanac into any supported agentic framework using the CLI. Covers framework detection, content search, installation with dependency resolution, health auditing, and manifest-based syncing. Use when setting up a new project with agentic capabilities, installing specific skills or entire domains, targeting multiple frameworks simultaneously, or maintaining a declarative manifest of installed content.

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Systematically interpret ultraviolet-visible absorption spectra to identify chromophores, classify electronic transitions, apply Woodward-Fieser rules for conjugated systems, and perform quantitative analysis using the Beer-Lambert law.

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Format a Quarto or R Markdown report following APA 7th edition style. Covers apaquarto/papaja packages, title page, abstracts, citations, tables, figures, and reference formatting. Use when writing an academic paper in APA format, creating a psychology or social science research report, generating reproducible manuscripts with embedded analysis, or preparing a thesis or dissertation chapter.

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Implement GitOps continuous delivery using Argo CD or Flux with app-of-apps pattern, automated sync policies, drift detection, and multi-environment promotion. Manage Kubernetes deployments declaratively from Git with automated reconciliation. Use when implementing declarative infrastructure management, migrating from imperative kubectl commands to Git-driven deployments, setting up multi-environment promotion workflows, enforcing code review gates for production, or meeting audit and compliance requirements.

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Interpret a chromatogram from GC or HPLC analysis: verify system suitability parameters, identify peaks by retention time and spectral matching, perform accurate peak integration, calculate chromatographic figures of merit, and assess overall peak quality for reliable quantitation.

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AI systematic knowledge acquisition from unfamiliar territory — deliberate model-building with feedback loops. Maps spaced repetition principles to AI reasoning: survey the territory, hypothesize structure, explore with probes, integrate findings, verify understanding, and consolidate for future retrieval. Use when encountering an unfamiliar codebase or domain, when a user asks about a topic requiring genuine investigation rather than recall, when multiple conflicting sources require building a coherent model, or when preparing to teach a topic and deep understanding is required first.

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Design terminal output for a CLI tool with chalk colors, Unicode glyphs, multiple verbosity levels (human, verbose, quiet, JSON), and consistent voice rules. Covers color palette selection, status indicator design, reporter function architecture, ceremony/narrative output variants, and cross-terminal compatibility. Use when building a new CLI reporter module, adding warm narrative output to an existing tool, standardizing output across multiple commands, or designing machine-readable JSON alongside human-readable text.

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Design an acoustic levitation system that uses standing waves to trap and suspend small objects at pressure nodes. Covers ultrasonic transducer selection, standing wave formation between a transducer and reflector, node spacing and trapping position calculation, acoustic radiation pressure analysis, and phased array configurations for multi-axis manipulation. Use when designing contactless sample handling for chemistry, biology, materials science, or demonstration purposes.

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Design an A2A Agent Card (.well-known/agent.json) manifest describing agent capabilities, skills, authentication requirements, and supported content types. Use when building an agent that must be discoverable by other A2A-compliant agents, exposing capabilities for multi-agent orchestration, migrating an existing agent to the A2A protocol, defining the public contract for an agent before implementation, or integrating with agent registries that consume Agent Cards.

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Deploy a Next.js application to Vercel. Covers project linking, environment variables, preview deployments, custom domains, and production deployment configuration. Use when deploying a Next.js app for the first time, setting up preview deployments for pull requests, configuring custom domains, or managing environment variables in a production Vercel deployment.

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Deploy applications to Kubernetes clusters using kubectl manifests for Deployments, Services, ConfigMaps, Secrets, and Ingress resources. Implement health checks, resource limits, rolling updates, and Helm chart packaging for production deployments. Use when deploying new applications to EKS, GKE, AKS, or self-hosted clusters, migrating from Docker Compose to container orchestration, implementing zero-downtime rolling updates, or setting up multi-environment deployments across dev, staging, and production.

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Deploy ShinyProxy for hosting multiple containerized Shiny applications. Covers ShinyProxy Docker deployment, application.yml configuration, Shiny app Docker images, authentication, container backends, usage tracking, and scaling. Use when hosting multiple Shiny apps behind a single entry point, needing per-app authentication and access control, deploying Shiny apps as isolated Docker containers, or scaling beyond single-app deployment with usage analytics and audit logging.

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Deploy Shiny applications to shinyapps.io, Posit Connect, or Docker containers. Covers rsconnect configuration, manifest generation, Dockerfile creation, and deployment verification. Use when publishing a Shiny app for external or internal users, moving from local development to a hosted environment, containerizing a Shiny app for Kubernetes or Docker deployment, or setting up automated deployment pipelines.

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Deploy a self-hosted SearXNG meta search engine via Docker Compose. Covers settings.yml configuration, engine selection, result proxying, Nginx frontend, persistence, and updates. Use when setting up a private search engine without tracking, aggregating results from multiple providers, running a shared search instance for a team or organisation, or replacing reliance on a single search provider.

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Deploy machine learning models to production serving infrastructure using MLflow, BentoML, or Seldon Core with REST/gRPC endpoints, implement autoscaling, monitoring, and A/B testing capabilities for high-performance model inference at scale. Use when deploying trained models for real-time inference, setting up REST or gRPC prediction APIs, implementing autoscaling for variable load, running A/B tests between model versions, or migrating from batch to real-time inference.

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Deploy machine learning models to edge devices using Google AI Edge Gallery, TensorFlow Lite, ONNX Runtime, and MediaPipe. Covers model quantization (INT8/INT4), on-device inference with Gemma 4 models, Android/iOS deployment via AI Edge Gallery, hardware delegate selection (GPU/NPU/DSP), and performance benchmarking on constrained devices. Use when deploying models to mobile phones, IoT devices, or embedded systems where cloud inference is impractical due to latency, cost, or connectivity constraints.

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Establish Service Level Objectives (SLO), Service Level Indicators (SLI), and Service Level Agreements (SLA) with error budget tracking, burn rate alerts, and automated reporting using Prometheus and tools like Sloth or Pyrra. Use when defining reliability targets for customer-facing services, balancing feature velocity against system reliability through error budgets, migrating from arbitrary uptime goals to data-driven metrics, or implementing Site Reliability Engineering practices.

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Implement layered collective defense using alarm signaling, role mobilization, and proportional response. Covers threat detection, alert propagation, immune response patterns, escalation tiers, and post-incident recovery for distributed systems and organizations. Use when designing defense-in-depth where no single guardian covers all threats, building incident response that scales with severity, or when current defense is over-reactive to every alert or under-reactive to genuine threats.

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Decommission a validated computerized system at end-of-life. Covers data retention assessment by regulation, data migration validation (mapping, transformation, reconciliation), archival strategy, access revocation, documentation archival, and stakeholder notification. Use when a validated system is being replaced, reaching end-of-life without replacement, vendor support is discontinued, multiple systems are consolidating, or regulatory changes render a system obsolete.

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Cut gemstones using cabochon and faceting techniques. Covers rough assessment, orientation for optimal color and yield, dopping, cutting angles, and crown/pavilion geometry for standard brilliant cuts. Use when you have rough gemstone material to cut into a cabochon or faceted stone, planning cutting orientation for optimal colour or optical phenomena, setting up a cabbing or faceting machine, or selecting the appropriate cutting approach for a given material.

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Build and maintain a library collection through acquisitions, weeding (deaccessioning), collection assessment, reader advisory, and interlibrary loan coordination. Covers selection criteria, collection development policies, the CREW/MUSTIE method for weeding, usage analysis, and responsive collection management. Use when building a new collection with a defined scope and budget, assessing an existing collection for gaps or outdated materials, when shelves are overcrowded and systematic weeding is needed, or when establishing a formal collection development policy.

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Conduct a structured cross-project code review between two Claude Code instances via the cross-review-mcp broker. Each agent reads its own codebase, reviews the peer's code, and engages in evidence-backed dialogue — with QSG scaling laws enforcing review quality through minimum bandwidth constraints and phase-gated progression.

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Statically enforce a privacy/redaction boundary on an artifact tree before publication, the way an AST checker enforces a code contract. Builds a two-tier gate — a shape-based deny-list (regex over identifier shapes) plus a structure-aware tier that parses JSON/HTML/SVG/Markdown/code and asserts sensitive content cannot appear in meaningful positions — with a strict exit-code contract, label-only output that never echoes the patterns themselves, and false-positive narrowing instead of suppressions. Use when gating a public mirror, a disclosure draft, a wire-capture export, or any artifact that must pass a leak check before it ships, and when a plain line-grep is too coarse to trust.

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Design Shiny application UIs using bslib for theming, layout_columns for responsive grids, value boxes, cards, and custom CSS/SCSS. Covers page layouts, accessibility, and brand consistency. Use when building a new Shiny app UI from scratch, modernizing an existing app from fluidPage to bslib, applying brand theming, making a Shiny app responsive across screen sizes, or improving accessibility of a Shiny application.

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