'computational' 검색 결과

Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.

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Computational pathology toolkit for whole-slide images (WSIs): load slides, extract tiles, stain normalization, nuclear segmentation, feature extraction, and ML training. Supports H&E and multiplex. For end-to-end pipelines from raw WSIs to quantitative outputs.

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Use CLAM for weakly supervised computational pathology workflows on whole-slide images, from WSI patching through features, training, evaluation, and heatmaps.

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Route Biopython computational biology workflows across sequence objects, file formats, alignments, structures, web databases, BioSQL, motifs, restriction enzymes, and specialized modules.

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Use Biotite for computational molecular biology workflows: sequence analysis, structure analysis, biological database access, file-format conversion, application wrappers, and optional molecular interfaces.

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Algorithmic philosophies are computational aesthetic movements that are then expressed through code. Output .md files (philosophy), .html files (interactive viewer), and .js files (generative algorithms).

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Think and work like an expert Computer Scientist. Use when a task calls for Computer Scientist judgment. Reasons from computational models, abstraction contracts, invariants, and measurable complexity through CLRS-grade algorithm analysis, impossibility results (FLP, CAP, NP-hardness), property-based and chaos testing, and formal tools (TLA+, Coq, Z3) while treating partial failure, race conditions, label leakage, and abstraction leaks like GC pauses and clock skew as first-class failure modes.

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Think and work like an expert Astrophysicist. Use when a task calls for Astrophysicist judgment. Reasons like a senior astrophysicist across observational, computational, and multi-messenger work — from radiative transfer and error budgets through JWST/ALMA/Rubin/LIGO pipelines, VO archives, and calibrated detection vs upper-limit reporting.

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Think and work like an expert Algebraist. Use when a task calls for Algebraist judgment. Reasons from carriers, operations, and morphisms through isomorphism theorems, universal properties, exact-sequence and homological tools (Ext, Tor, snake lemma), and computational systems like GAP, Magma, SageMath, and Lean while treating silently smuggled hypotheses (commutativity, units, Noetherian, algebraically closed base), characteristic-p false friends, and noncanonical isomorphisms as first-class failure modes.

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Detect and remove doublets from flow and mass cytometry data. Covers FSC/SSC gating and computational doublet detection methods. Use when filtering out cell aggregates before clustering or quantitative analysis.

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Predict RBP binding from RNA sequence using deep learning models (RBPNet sequence-to-signal, RNAProt RNN, GraphProt2 GCN with structure, DeepCLIP, DeepRiPe multi-modal CNN) for variant-effect prediction, in silico binding-site discovery, model interpretation, and transfer learning from CLIP and RBNS datasets. Use when computational prediction of RBP binding from sequence is needed, evaluating variant effects on binding without further wet-lab experiments, comparing model performance, or training a custom model on ENCODE eCLIP data.

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Build interactive web applications using HTML/JavaScript interfaces with MATLAB computational backends via the uihtml component. Use when creating HTML-based MATLAB apps, JavaScript MATLAB interfaces, web UIs with MATLAB, interactive MATLAB GUIs, or when user mentions uihtml, HTML, JavaScript, web apps, or web interfaces.

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Infrastructure and practices for reproducible computational research. Covers environment management, data versioning, code documentation, and sharing protocols that enable others to reproduce your results. Use when ", " mentioned.

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Patterns for building, maintaining, and scaling bioinformatics workflows. Covers Nextflow, Snakemake, WDL/Cromwell, container orchestration, and best practices for reproducible computational biology. Use when ", " mentioned.

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Create a specification for an interactive scientific Datagrok application (simulation, ODE/PDE solver, computational tool)

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Understanding how digital systems actually work -- hardware, operating systems, networks, and information representation -- at a depth sufficient to reason about them rather than just use them. Covers CPU/RAM/storage/GPU roles, what an OS does, how packets travel the internet, and how computers represent numbers, text, images, and sound as binary. Use when a learner needs to build a mental model of computing rather than memorize menu paths.

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Compressive Vasomotion Hypothesis (CVH) — vasomotion as a fast compression sweep that collapses ambivalent neural resonances (the Bayesian-blur problem) into a definite state. Use when modeling the ~100ms taṇhā 'grab', precision-weighting as compression forcefulness, or the generative collapse step of vasocomputational active inference.

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Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.

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Nature-style materials science manuscript reviewer skill for testing materials design, synthesis, processing, structure-property, mechanism, stability, scalability, computational prediction and application claims against materials evidence chains.

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Comprehensive scientific research toolkit with 139 specialized skills for biology, chemistry, medicine, data science, and computational research. Transforms Claude into an AI research assistant with access to scientific databases, analysis tools, and domain-specific workflows.

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On-demand journal peer review simulation expert — supports 7 research paradigms (experimental/computational/empirical_survey/interpretive/mixed_methods/systematic_review/interdisciplinary) with 6-step review workflow, outputting targeted revision suggestions based on journal-specific review standards.

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Assume the role of Galyarder CTO (Chief Technology Officer). Technical guardian. Enforce technical integrity, architectural determinism, self-healing formal verification, and planetary computational leverage.

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Systematic drug repurposing — computational screening, evidence triangulation, and validation strategy.

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Practical computational and experimental chemistry workflows — cheminformatics, quantum chemistry, kinetics, and analytical methods.

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