「states」の検索結果

Apply or adapt a dual-theme soft-neumorphic UI board for dashboards, workspaces, settings panels, admin tools, and design-system previews. Use when Codex should build or restyle interface work in a tactile soft-neumorphic style with both light and dark themes, shared semantic tokens, large radii, raised surfaces, inset fields, restrained accent states, and a complete preview board covering foundations, controls, navigation, data display, and feedback.

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BDI (Beliefs-Desires-Intentions) agency framework for designing autonomous agents with mental state architectures

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Detects differential alternative splicing between conditions using rMATS-turbo (binomial LRT on junction counts), leafcutter (Dirichlet-multinomial GLM on intron clusters), MAJIQ V3 deltapsi/HET (Bayesian posterior on LSVs), SUPPA2 (empirical-null on TPM-derived PSI), or Shiba (junction-imbalance-corrected, 2025 SOTA at low coverage). Reports FDR-corrected significance and delta PSI effect sizes. Tools differ in statistical model, annotation dependence, calibration regime, and replicate-count requirements. Use when comparing splicing patterns between treatment groups, tissues, or disease states.

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Build Sankey, alluvial, river, and CONSORT-style flow diagrams to visualize cohort transitions, cell-state changes, or pipeline filtering using ggalluvial, networkD3, plotly, and consort. Use when showing how entities move between categories across timepoints (cell states, drug response classes, patient flow through a trial) or filtering pipelines (variants filtered through QC stages).

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Detect somatic and germline copy number variants from targeted, exome, and whole-genome sequencing with CNVkit, a read-depth caller that combines on-target and off-target (antitarget) coverage. Covers panel-of-normals construction, flat-reference tumor-only calling, hybrid/amplicon/WGS modes, CBS vs HMM segmentation selection, purity-aware integer calling, and reconciliation against GATK and allele-specific callers. Use when calling CNVs from hybrid-capture panels or exomes, deciding whether CNVkit (depth-only) is the right tool versus an allele-specific caller, building a panel of normals, diagnosing flat-reference false positives, or interpreting log2 ratios into copy-number states.

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Reconstruct ancestral states at internal phylogenetic nodes for sequences (PAML codeml, IQ-TREE --ancestral, GRASP, FastML), discrete traits (corHMM hidden-rate Markov, ape::ace, phytools::make.simmap stochastic mapping, BayesTraits), and continuous traits (phytools::fastAnc, geiger Brownian/OU, RPANDA). Use when designing constructs for ancestral protein resurrection, tracing trait evolution along a tree, performing stochastic character mapping, testing models of trait evolution (BM vs OU vs EB), inferring ancestral genome content via Dollo or DTL reconciliation, or quantifying ancestral-state uncertainty for downstream comparative analyses.

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Resolve subclonal copy number, whole-genome doubling, and copy-number tumor evolution from bulk sequencing with Battenberg, TITAN, and MEDICC2. Covers clonal versus subclonal copy-number states, haplotype phasing for subclonal resolution, cancer cell fraction, whole-genome-doubling detection and timing relative to mutations, mirrored subclonal allelic imbalance, and copy-number phylogenies. Use when a tumor is heterogeneous and bulk data shows non-integer copy number, when calling subclonal CNAs, detecting or timing whole-genome doubling, reconstructing copy-number evolution, or deciding between Battenberg and TITAN.

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Sequence-based deep learning for ATAC-seq using chromBPNet, BPNet, scBasset, or Enformer. Use when correcting Tn5 bias with neural networks beyond k-mer models, predicting per-base accessibility profiles, scoring in silico variant effects at GWAS or rare-variant SNPs, discovering motifs via DeepLIFT/TF-MoDISco from a trained model, or generating cell-type-specific accessibility predictions for unobserved cell states.

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Use ane for ALL file exploration, discovery, reading, and editing unless the user states otherwise. `ane exec <file> --chord "<chord>"` handles reads (Yank), searches (List), and edits (Change, Delete, Replace, Append, Prepend, Insert). Prefer ane over builtin file tools and shell utilities like grep, sed, and cat.

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Capture baseline evidence from a live website URL: screenshots, scroll states, hover/click behavior, parallax, timers, and transition recordings. Use when reference artifacts are needed before implementation or comparison; not to build or diagnose a clone.

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Evaluate and install ecosystem tools (Hermes plugins, skills, integrations) — assess complexity vs. benefit before installation, show examples for visual tools, and avoid "cloned but not configured" states.

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Expert-level quantum mechanics knowledge. Use when working with wave functions, Schrodinger equation, quantum states, operators, uncertainty principle, quantum tunneling, spin, angular momentum, perturbation theory, or quantum entanglement. Also use when the user mentions 'wave function', 'Schrodinger', 'Heisenberg', 'quantum state', 'eigenvalue', 'superposition', 'tunneling', 'spin', 'Hilbert space', 'Dirac notation', 'commutator', or 'quantum measurement'.

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Review a written plan or design doc through a designer's lens before implementation - seven passes over information architecture, interaction states, emotional arc, AI-slop risk, design-system alignment, responsive and accessibility coverage, and unresolved decisions. Each dimension is rated 0-10 with an explicit statement of what would make it a 10, then the plan is edited to get there. Use when a plan has a UI surface and you want the design gaps closed before code is written. Not for auditing a live site.

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Improve interface resilience through better error handling, i18n support, text overflow handling, and edge case management. Makes interfaces robust and production-ready. Use when the user asks to harden, make production-ready, handle edge cases, add error states, or fix overflow and i18n issues.

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Type-safe URL query state management with nuqs 2.x. Use when writing or reviewing code that uses useQueryState, useQueryStates, URL search params, query parameters, nuqs parsers, createLoader, createSearchParamsCache, createSerializer, or URL state in Next.js, React, Remix, React Router, or TanStack Router.

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Quando o usuário quer otimizar onboarding pós-signup, ativação de usuários, experiência de primeira execução ou time-to-value. Use também quando o usuário menciona "fluxo de onboarding", "taxa de ativação", "ativação de usuários", "experiência de primeira execução", "empty states", "checklist de onboarding", "aha moment" ou "experiência do novo usuário". Para otimização de signup/registro, veja signup-flow-cro. Para sequências de email contínuas, veja email-sequence.

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[Code Quality] Use when reviewing UI/frontend changes for long-content overflow, responsive multi-screen layout (flex-wrap / row-to-column on small devices), flex-vs-fixed sizing, z-index discipline, SCSS/BEM styling quality, and async UI states & feedback (loading indicator, error surface, empty state).

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Plan and document handoffs, parent lane contracts, and parallel batch contracts between specialized AI agents (foreman, workers, reviewers). Use for multi-agent workflows, subagents, original goal preservation, native gates, claim ceilings, terminal states, baton passes, or guild-style agent coordination.

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Use when integrating an app with local AI models through Ollama — connection checks, model listing/selection, local-only mode, cloud-fallback consent, visible run states, and recovering from Ollama errors.

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Use when reviewing an app for launch-readiness — Product Hunt polish, first impression, visual hierarchy, onboarding, empty states, screenshots, positioning, and the tiny details that make it feel premium.

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Design engineering principles for making interfaces feel polished. Use when building UI components, reviewing frontend code, implementing animations, hover states, shadows, borders, typography, micro-interactions, enter/exit animations, or any visual detail work. Triggers on UI polish, design details, "make it feel better", "feels off", stagger animations, border radius, optical alignment, font smoothing, tabular numbers, image outlines, box shadows.

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Design and review client UI changes — visual token discipline, reuse-before-adding, feedback surfaces (toast vs in-place notice vs empty state), overlay and menu safety, platform window adaptation, loading states, and error copy placement. Use when adding or changing product-user-visible GUI behavior, or when reviewing such a PR.

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SOP for the micro-execution C.O.R.E. phase. Trigger when: - Implementing plan steps, managing code changes at commit boundaries, and verifying incremental progress. - Navigating states: Absorb, Clarify, Plan, Execute. - Prompt contains: /core, core workflow, absorb, clarify, execution invariants, commit boundary, verify assertion.

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SOP for normative specification and behavioral contracts. Trigger when: - Defining invariants, permitted transitions, and forbidden states. - Navigating steps: Identify, Formalize, Verify, Record, Connect. - Prompt contains: /spec, spec workflow, normative constraint, invariant, BCP 14.

日本語の概要は準備中です。原文の説明を表示しています。