Validates predictive models on omics and biomedical data with nested cross-validation, group/batch/temporal-aware splits, the full data-leakage taxonomy, probability calibration, decision-curve net benefit, optimism correction, sample-size planning, and TRIPOD+AI reporting. Use when estimating model performance honestly, choosing a CV scheme, detecting leakage, or judging whether reported discrimination means the model is actually useful. For feature selection itself see machine-learning/biomarker-discovery; for confirmatory-trial inference see clinical-biostatistics/trial-reporting.
日本語の概要は準備中です。原文の説明を表示しています。
huang-sh/DeepScience☆ 42026年7月15日 更新
Runs and configures curated nf-core community Nextflow pipelines (rnaseq, sarek, atacseq, methylseq, ampliseq, taxprofiler, fetchngs) reproducibly, pinning the pipeline revision with -r and selecting a container engine and institutional config via -profile. Use when deciding to adopt a community pipeline versus author one from scratch; picking a pipeline and pinning its -r revision; selecting -profile test/docker/singularity/conda plus an institutional config from nf-core/configs; building and validating a samplesheet CSV against the pipeline schema (nf-schema); choosing --genome/iGenomes versus custom references; configuring resources and max_memory for SLURM/AWS Batch; using -resume and -stub; and reading MultiQC outputs.
日本語の概要は準備中です。原文の説明を表示しています。
huang-sh/DeepScience☆ 42026年7月15日 更新
End-to-end shotgun metagenomics workflow from FASTQ to taxonomic and functional profiles, orchestrating controls/host depletion, Kraken2+Bracken classification, MetaPhlAn marker profiling, and HUMAnN functional profiling. Covers the controls-first ordering, why Kraken2 read counts are not abundances and MetaPhlAn cell fractions do not equal Bracken read fractions, and the consistent-pipeline framing. Use when profiling shotgun metagenomic samples end to end, or chaining classification, abundance, and function. For resistome see metagenomics/amr-detection; for strains see metagenomics/strain-tracking; for assembly see genome-assembly/metagenome-assembly.
日本語の概要は準備中です。原文の説明を表示しています。
huang-sh/DeepScience☆ 42026年7月15日 更新
Dereplicate a putative natural product and assign its chemical taxonomy. Use to answer "is [compound] a known natural product", "what microbe/organism produces [compound]", "what chemical class is [compound]", "dereplicate this metabolite (by formula/exact mass/InChIKey/SMILES)", or "classify this molecule into ChemOnt". Searches NPAtlas for known microbial natural products (producing organism + literature reference), assigns the ChemOnt kingdom→superclass→class→subclass hierarchy via ClassyFire, resolves systematic IUPAC names to structure via OPSIN, and cross-references identity in PubChem. NOT for general drug/compound identity or ADMET (use tooluniverse-chemical-compound-retrieval / tooluniverse-small-molecule-discovery) and NOT for metabolomics pathway/enrichment analysis (use tooluniverse-metabolomics skills).
日本語の概要は準備中です。原文の説明を表示しています。
huang-sh/DeepScience☆ 42026年7月15日 更新
Generate an XLSX billing statement with a merged company header, subscription line items, overages, credits, and subtotal/tax/total formulas.
日本語の概要は準備中です。原文の説明を表示しています。
iterationlayer/skills☆ 42026年6月9日 更新
Generate an XLSX invoice with company info, line items, subtotal/tax/total formulas, and currency formatting.
日本語の概要は準備中です。原文の説明を表示しています。
iterationlayer/skills☆ 42026年6月9日 更新
Extract receipt number, issuer, payer, date, tax, and total from Japanese receipts.
日本語の概要は準備中です。原文の説明を表示しています。
iterationlayer/skills☆ 42026年6月9日 更新
Extract merchant, date, line items, tax, and total from receipts.
日本語の概要は準備中です。原文の説明を表示しています。
iterationlayer/skills☆ 42026年6月9日 更新
Extract property, owner, legal description, liens, mortgages, easements, and tax status from title search reports.
日本語の概要は準備中です。原文の説明を表示しています。
iterationlayer/skills☆ 42026年6月9日 更新
Extract employee, employer, allowances, deductions, taxes, and net pay from Japanese payslips.
日本語の概要は準備中です。原文の説明を表示しています。
iterationlayer/skills☆ 42026年6月9日 更新
Extract carrier invoice, shipment references, rates, accessorials, taxes, and total charges from freight bills.
日本語の概要は準備中です。原文の説明を表示しています。
iterationlayer/skills☆ 42026年6月9日 更新
Extract employee, employer, gross pay, cotisations, tax, and net pay from French payslips.
日本語の概要は準備中です。原文の説明を表示しています。
iterationlayer/skills☆ 42026年6月9日 更新
Extract employee, employer, gross wage, tax deductions, social insurance, and net wage from German payslips.
日本語の概要は準備中です。原文の説明を表示しています。
iterationlayer/skills☆ 42026年6月9日 更新
Extract employee, employer, earnings, deductions, tax, and net pay from Spanish or Latin American payroll slips.
日本語の概要は準備中です。原文の説明を表示しています。
iterationlayer/skills☆ 42026年6月9日 更新
Extract employee, department, expense lines, tax, totals, and approval fields from Japanese expense settlement forms.
日本語の概要は準備中です。原文の説明を表示しています。
iterationlayer/skills☆ 42026年6月9日 更新
Runs Scenic probabilistic scenarios against a running CARLA server with the `scenic FILE --simulate --2d` CLI — the carlaChallenge1-10 traffic scenarios shipped by ScenarioRunner (`model srunner.scenic.models.model`) and by Scenic itself (`model scenic.simulators.carla.model`) — bounding the run, sampling scenes headlessly first to tell a map problem from a syntax problem, and restoring the world afterwards. Use when the user asks to "run a Scenic scenario", "run carlaChallenge", "test a .scenic file", "scenic --simulate", or reports a Scenic scenario that rejects every sample or cannot find blueprints.
日本語の概要は準備中です。原文の説明を表示しています。
carla-simulator/carla-agentic-tools☆ 42026年9月12日 更新
Taxonomia de 86 layouts de apresentação/marketing (hero, pricing, auth, nav, CTA, testimonials, footer, FAQ, onboarding, blog, contact, stats, bento, states) adaptada do VibeUI. Consultar ANTES de construir landing pages, onboarding flows, auth screens, ou qualquer UI de camada de apresentação. Complementa o design-library/solutions (que cobre módulos verticais de produto).
日本語の概要は準備中です。原文の説明を表示しています。
aibot88/sec_skill_store☆ 42026年5月27日 更新
毎月の給与から引かれる源泉所得税(月額表の甲欄)の目安を、国税庁が公表する電算機計算の特例の式で計算する。社会保険料等控除後の月給と扶養人数から税額を出し、令和8年分(2026年支給分)と令和9年分(2027年支給分)の違いも示せる。年末調整・賞与・乙欄・日額表・住民税は対象外。税額表の金額と一致しないことがある点を必ず伝える。
tahodev/kurashi-skill☆ 42026年10月13日 更新
Design what an employer will have a candidate do during an Otameshi Tenshoku trial: turn a business problem into a bounded paid assignment or an unpaid learning visit, with scope, completion criteria, candidate hours, company staff hours, duration, compensation and change conditions, and check the planned cost against the budget. Use when a hiring manager, recruiter or small-business owner wants to decide what work to offer, how much time it takes, what it costs, or how to adjust a plan when materials are late or the scope grows; do not use to write the public listing (trial-listing-draft), to reply to applicants (applicant-reply), to state market rates, legal, tax or service conditions from memory, or to post, contact or contract on the user's behalf.
日本語の概要は準備中です。原文の説明を表示しています。
ficilcom/otame4-work-skills☆ 42026年9月23日 更新
Check, from the employer's side, what has been put in writing before a paid Otameshi Tenshoku assignment starts under gyomu-itaku: item by item whether the deliverable, delivery date, fee and how it is calculated, payment due date, who pays, out-of-scope work, revision limits, company support, rights, confidentiality and termination are stated in a contract, purchase order or email rather than in chat or by word of mouth, count the days from delivery to payment, and find pay tied to satisfaction or hiring, unpaid or unlimited revisions and one-sided termination. Use when a hiring manager, recruiter or small-business owner is about to offer terms to a candidate, has been asked by a candidate what is still unwritten, or needs the conditions written for a platform contract screen; do not use to judge whether the terms are lawful or the fee fair, to compute withholding or consumption tax, for employment contracts, or to sign, send or conclude the contract on the user's behalf.
日本語の概要は準備中です。原文の説明を表示しています。
ficilcom/otame4-work-skills☆ 42026年9月23日 更新
Draft or review an employer's Otameshi Tenshoku listing so a candidate can decide whether to apply: check item by item that the work, deliverable, out-of-scope tasks, required experience, support, hours, schedule, location, compensation, contract form and payment timing are stated, find open-ended, unpaid-company-work, guarantee, personal-attribute and unverifiable wording, and confirm that the hours, weekly availability, period, rate and budget hold together. Use when a hiring manager, recruiter or small-business owner wants a listing written from a plan, wants an existing draft or published listing reviewed before or after posting, or wants to know why applications are not coming; do not use to design the work itself (trial-work-design), to reply to applicants (applicant-reply), to state market rates, legal, tax or service conditions from memory, or to post or update the listing on the user's behalf.
日本語の概要は準備中です。原文の説明を表示しています。
ficilcom/otame4-work-skills☆ 42026年9月23日 更新
Plan a resignation and the move to a new employer: check the intended notice date, last working day, and start date against the notice period the employer's own rules require, count the weekdays left against remaining paid leave, and work through the checklist of handover, documents to receive, items to return, and the insurance, pension, and residual tax steps that a gap between jobs creates. Use when a user has accepted an offer and needs to work out when and how to resign, or wants to know what to confirm before giving notice; do not use to rule on whether they can legally leave, to judge a non-compete clause, to promise the departure will go smoothly, or to notify anyone.
日本語の概要は準備中です。原文の説明を表示しています。
ficilcom/otame4-work-skills☆ 42026年9月23日 更新
Detects and removes contamination in genome assemblies via two disjoint workflows - foreign-sequence screening of a single-organism (eukaryote/isolate) assembly with NCBI FCS-GX (GenBank-submission-mandatory), FCS-adaptor, and BlobToolKit blob plots; and MAG/bin quality assessment with CheckM2 plus GUNC (chimerism) plus GTDB-Tk taxonomy, judged against MIMAG. Covers why CheckM2 alone is blind to disjoint-marker chimeras, the FCS-GX RAM wall, organelle/NUMT triage, strain heterogeneity, and the HGT-vs-contamination (tardigrade) trap. Use when screening an assembly for foreign contamination before GenBank submission, assessing MAG completeness/contamination/chimerism, deciding which contigs to remove, or distinguishing real HGT from contaminant contigs.
日本語の概要は準備中です。原文の説明を表示しています。
peacezha/TRACE☆ 32026年10月13日 更新
Processes eDNA metabarcoding from raw paired-end reads to species tables, navigating ASV (DADA2, UNOISE3) vs OTU (swarm v2) decision (Callahan 2017 vs Schloss multi-copy-16S critique), marker/primer choice (Leray COI, MiFish 12S, 515F/806R 16S, ITS2) with primer-specific bias, OBITools3 v3 command-name break (obi stats plural; .tar.gz taxonomy), tag-jumping with dual-indexing (Schnell 2015; NovaSeq 10x MiSeq), decontam as screening-not-classifier (Davis 2018), read-counts-not-abundance critique (Lamb 2019), site-occupancy modeling (Ficetola 2015), Naive-Bayes calibration limits (Bokulich 2018), and eDNA decay (Strickler 2015). Use when going from raw eDNA FASTQ to species tables, picking marker + denoising pipeline, deciding whether read counts represent abundance, applying occupancy modeling, configuring OBITools3 v3, or interpreting decontam output. Not for clinical 16S microbiome (see microbiome/amplicon-processing).
日本語の概要は準備中です。原文の説明を表示しています。
peacezha/TRACE☆ 32026年10月13日 更新