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Delimits putative species boundaries from molecular data within the de Queiroz 2007 unified-lineage framework using ASAP (Puillandre 2021 successor to ABGD), mPTP C++ (Kapli 2017 successor to bPTP; bPTP is Python NOT R), GMYC single/multi-threshold (Pons 2006; Fujisawa 2013), multilocus BPP v4 with prior calibration from data (NOT defaults; Yang 2015), SNAPP + BFD* for SNP delimitation, DELINEATE (Sukumaran 2021) speciation-process modeling to address Sukumaran & Knowles 2017 PNAS critique that MSC delimits structure not species, integrative-taxonomy congruence (Padial 2010; Carstens 2013), Dsuite for introgression testing before sister claims (Malinsky 2021), and Meyer & Paulay 2005 barcoding-gap-absence caveat. Use when delineating species from DNA barcoding data, resolving cryptic complexes, choosing among ASAP/mPTP/BPP/DELINEATE, calibrating BPP priors, distinguishing introgression from ILS, or applying the Sukumaran-Knowles oversplitting correction.

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Identify recurrent and driver copy number alterations across a tumor cohort with GISTIC2 (G-score, Ziggurat deconstruction, focal vs broad/arm-level analysis, q-values from permutation) and quantify copy-number signatures with the Steele 2022 COSMIC framework and the Drews 2022 CINSignatures framework. Covers driver-gene localization from recurrence peaks, distinguishing focal drivers from arm-level passengers, and the caller-sensitivity caveats of copy-number signatures. Use when finding recurrently amplified or deleted regions in a cohort, localizing driver genes, separating focal from broad events, running GISTIC2, or extracting copy-number mutational signatures.

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Quantifies CRISPR editing outcomes with CRISPResso2 (Clement 2019 Nat Biotechnol) across Cas9-nuclease (indels, HDR), CBE and ABE base editors (target conversion + bystander), and prime editor (pegRNA-templated) modes. Covers single-amplicon (CRISPResso), multi-sample batch (CRISPRessoBatch), pooled-amplicon (CRISPRessoPooled), WGS off-target (CRISPRessoWGS), and sample-comparison (CRISPRessoCompare) workflows; quantification-window math that controls what is called edited; substitution-vs-indel diagnostic to distinguish BE from Cas9 contamination; MMEJ deletion pattern interpretation; allele-frequency tables; and failure modes from amplicon misalignment or contamination. Use when quantifying editing from amplicon sequencing, choosing CRISPResso mode by design, distinguishing intended edits from bystanders and indel byproducts, debugging low-alignment runs, or generating publication-grade editing reports.

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Build a RoadRunner Scenario programmatically from an OpenSCENARIO 1.x (.xosc) file using the `roadrunner-scenario-authoring` skill. Use when the user wants to recreate a scenario from a .xosc file, interpret an OpenSCENARIO file and build it programmatically, reconstruct a .xosc as a RoadRunner scenario, generate a MATLAB script from a .xosc file, or convert an OpenSCENARIO file to MATLAB code. Do NOT use when the user says "import" a .xosc file — that means they want RoadRunner's built-in importScenario API, not programmatic reconstruction. Handles position translation (LanePosition and RoadPosition to world coordinates), construct mapping, relative references, trajectory/route handling, parameter expressions, catalog references, and phase logic topology.

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Import PyTorch, ONNX, or Keras 3 / TensorFlow 2.16+ deep learning models into MATLAB as dlnetwork objects. Use when importing .pt2 exported programs, traced .pt files, .onnx models, or Keras 3 models via matlabsaver. Covers importNetworkFromPyTorch, importNetworkFromONNX, importNetworkFromKeras, importNetworkFromTensorFlow, torch.export.export, PyTorchInputSizes, InputDataFormats, matlabsaver, tf_keras downgrade, numeric validation against PyTorch or ONNX Runtime, and placeholder/custom layer implementation. Applies when user mentions any of these functions, file formats, or encounters import errors, unsupported operator warnings, 0 learnables, or uninitialized networks.

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Restore a prior business-state snapshot saved by /money-save, so you can continue from exactly where the last session left off. Loads the most recent snapshot for the current project (auto-detected from the working directory), or a specific one by index. Use when starting a new Claude Code conversation and the user wants to continue prior work. Triggered by: 'continue from last time', 'where did we leave off', 'pick up from before', 'resume', '接着上次', '续上', '之前的结论', '上次诊断到哪了'.

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One-line summary of key Agent Monitor metrics — active sessions, total cost from the pricing engine, events today from daily_events, top tool from tool_usage, and current model from the most recent session. Use for a fast at-a-glance check without leaving the terminal.

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Analyze prompt-cache effectiveness for Claude Code usage from the Agent Monitor dashboard — cache hit rate (total_cache_read / (total_cache_read + total_input)), cache_write vs cache_read reuse, cache-read vs cache-write spend, and the sessions with the poorest reuse. Pulls token totals from /api/analytics, per-session detail from /api/sessions, and dollar splits from /api/pricing/cost. Use when diagnosing cache spend or deciding whether prompt caching is paying off.

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Exhaustively extract UX patterns from a reference web app. Walks every screen, captures screenshots of every state, records interaction patterns, copy verbatim, keyboard shortcuts, responsive treatments, motion, and empty/error/loading states. Produces a reusable pattern library that other audits can compare against. The inverse of ux-audit — asks 'what is the bar?' rather than 'does this match the bar?'. Trigger with 'learn from X', 'extract patterns from X', 'study X's UX', 'reverse engineer the UX of X', 'build a pattern library from X'.

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Cross-format content adaptation. Turning one substantial piece into many derivative formats (blog series, email sequences, social posts, webinars, podcasts, video shorts) without losing the original's value or producing AI-slop variants. The discipline of adaptation per medium rather than mass-blast distribution. Triggers on content repurposing, content adaptation, cross-format content, content atomization, content multiplication, content distribution across formats, source-piece-to-derivative, video shorts from blog, email from whitepaper, podcast from article, blog series from research. Also triggers when a flagship piece is shipping but the team has not planned how to extend it across formats, when repurposing is happening but the derivatives feel mass-produced, or when AI-assisted repurposing is producing slop variants of strong source pieces.

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No Inference / Source-Locked Verification. Forces Claude to answer ONLY from user-provided materials and/or online sources actually accessed — no inference, no assumptions, no gap-filling. Every factual, legal, numerical, or procedural claim must be anchored to a cited source. Use whenever Claude reviews documents, summarises evidence, checks accuracy, drafts submissions, creates timelines, extracts facts, checks citations, analyses rules, prepares legal arguments, compares documents, verifies claims, produces chronologies, works from uploaded materials, performs legal research, checks case status, or does anything where evidential fidelity matters. Also trigger on: 'source-locked', 'no inference', 'only from the materials', 'don't assume', 'stick to the evidence', 'verify this', 'check this is right', 'work from the documents'. Overrides Claude's default tendency to fill gaps. If evidential accuracy matters, use this skill.

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End-to-end motion-design / animated-ad creation flow on Higgsfield via the MCP connector. Use when the user wants to create motion design, animate a logo, make a video from an image, build an animated ad or brand promo, turn a product into motion, or says 'make a motion', 'motion design', 'animate this', 'make a video from my logo', 'animated brand', 'motion graphics', 'brand motion', 'kinetic graphics', 'promo video', or 'ad video'. Drives a storyboard-first pipeline: brief → storyboard sheet (GPT Image 2) → video (Seedance 2.0) — an AI-generated pixel video clip. Distinct from higgsfield-motion (the named camera/motion preset library) and from higgsfield-vibe-motion (deterministic Remotion code with crisp text); use vibe-motion instead when the text/logo must stay perfectly crisp, editable, and deployable as code.

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Extract clean markdown or text content from specific URLs via the Tavily CLI. Use this skill when the user has one or more URLs and wants their content, says "extract", "grab the content from", "pull the text from", "get the page at", "read this webpage", or needs clean text from web pages. Handles JavaScript-rendered pages, returns LLM-optimized markdown, and supports query-focused chunking for targeted extraction. Can process up to 20 URLs in a single call.

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Symbolicate the .NET runtime frames in an Android tombstone file. Extracts BuildIds and PC offsets from the native backtrace, downloads debug symbols from the Microsoft symbol server, and runs llvm-symbolizer to produce function names with source file and line numbers. USE FOR triaging a .NET MAUI or Mono Android app crash from a tombstone, resolving native backtrace frames in libmonosgen-2.0.so or libcoreclr.so to .NET runtime source code, or investigating SIGABRT, SIGSEGV, or other native signals originating from the .NET runtime on Android. DO NOT USE FOR pure Java/Kotlin crashes, managed .NET exceptions that are already captured in logcat, or iOS crash logs. INVOKES Symbolicate-Tombstone.ps1 script, llvm-symbolizer, Microsoft symbol server.

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Extract component metadata from a Figma design system and generate production-ready QML controls. Use this skill whenever someone wants to turn Figma components into QML files — whether they say "generate components from Figma", "create QML controls based on a design system", "convert Figma components to QML", "build the component library", "extract button/input/checkbox from Figma", or anything similar. Requires design-tokens.json and QML design system singletons to already exist (from the token extraction skill). Uses Figma MCP to inspect components one at a time and maps variants, states, sizing, and token usage to idiomatic Qt Quick Controls 2 patterns. Trigger this skill at the component generation step of any QML design-system workflow.

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Extract design tokens, text styles, and variables from a Figma design system and produce a design-tokens.json plus ready-to-use QML singletons. Use this skill whenever someone wants to pull their design system out of Figma — whether they say "export tokens from Figma", "get design tokens", "set up my design system", "read our Figma design system", "get Figma variables into QML", "pull our color palette from Figma", "import design tokens", "extract colors/typography/spacing from Figma", or similar. Trigger this skill at the start of any design-system workflow that involves a Figma source.

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Removes unwanted visual elements from videos using AI-powered inpainting via Volcengine LAS. Video watermark removal, subtitle removal, logo removal, and text overlay removal — erases and cleans up watermarks, hardcoded subtitles, logos, text, and other fixed-region artifacts and obstructions from video footage. Video inpainting, video repair, video restoration, and video cleanup. Supports specifying exact bounding boxes for targeted removal and erasure. Handles videos up to 4 hours and 30GB. Use this skill when the user wants to remove watermarks from videos, erase hardcoded subtitles/captions, delete logo or text overlays, clean up video footage by removing unwanted objects, repair or restore videos by removing obstructions, do video inpainting on fixed regions, or remove visual artifacts from video content.

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Guides the creation of detailed agile feature documentation from an existing epic. Use when the user wants to split an epic into feature files, derive features with scope and acceptance criteria, or plan feature documentation for stakeholders or engineering. This should trigger for requests such as Create features from an epic; Split epic into features; Feature files from epic; Derive features from epic; Break down an agile epic into deliverable features. Part of Plinth Toolkit

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Extract structured data from clinical notes with span-level provenance and null-safety. Use when users say "extract [variables] from this note", "abstract this chart", "pull structured data from these notes", "what does this note say about [field]", or when building a chart-abstraction, registry, or cohort dataset from unstructured clinical text.

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临考复习教练 / Exam cram coach. 学生给一个课程资料文件夹（课件 PDF/PPTX/DOCX/笔记/作业/答案/真题/往年卷），它按章节讲解并标出处、把讲义和题目里的图裁出来展示、只用资料里的题考试判分、记错题和笔记、按天排复习计划、做小抄，并标明每句话是否来自资料。触发词：期末、期中、考试、备考、复习、突击、刷题、真题、作业讲解、错题本、划重点、小抄、复习计划、考研、考证、课件讲解、讲义。Use when a student wants to prepare for a final, midterm or any exam from their own course files: teach chapter by chapter with page citations and the figures cropped from the materials, quiz only from the homework and past papers, keep progress, mistakes and notes across chats, plan the remaining days, build a cheat sheet, and label what comes from the materials. Triggers: exam prep, cram, revise, study for the test, lecture slides, homework solutions, past papers, practice questions, quiz me, mistake log, cheat sheet, study plan, study guide, flashcards.

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Extract structured data from websites, scrape page content, and collect information across multiple pages. Trigger when the user asks to: extract data from a website, scrape a page, collect information from URLs, pull content from web pages, gather data across multiple pages, or download page content.

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Recover data from archived REST APIs using Wayback Machine. Use when: (1) Recovering data from defunct services like Vine, Twitter, or other platforms, (2) Need to find which API endpoints were archived vs which require authentication, (3) Building data recovery pipelines from web.archive.org. Covers CDX API queries to discover archived endpoints, understanding what gets archived (public) vs what doesn't (authenticated), and extracting embedded JSON from archived web pages as a fallback.

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Fix "backend exists on a draft version but isn't reachable from the new Compute deploy" bugs after `fastly compute publish`. Use when: (1) You ran `fastly service backend create --autoclone` (or any dashboard/CLI change that creates a draft version) but did not activate that draft, (2) You then ran `fastly compute publish` which appeared successful but your backend / ACL / header / dictionary change is missing from the active version, (3) Compute code returns backend-not-found errors or misroutes requests, (4) You're surprised to see your draft version number "skipped over" in the version chain. Root cause: `fastly compute publish` clones from the currently-active version, not from the latest draft, so dashboard changes made in an un-activated draft get stranded.

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Think and work like an expert Cancer Biologist. Use when a task calls for Cancer Biologist judgment. Reasons from hallmark capabilities, clonal evolution, and TME context; separates driver from passenger, cell-autonomous from stromal mechanisms, and 2D artifacts from PDO/PDX-validated dependencies using TCGA, DepMap, OncoKB, and REMARK-grade biomarker logic.

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