「graph」の検索結果

Build and analyze pangenomes for prokaryotes (Panaroo, PPanGGOLiN, PEPPAN, GET_HOMOLOGUES, anvi'o pangenomics) and eukaryotes (Minigraph-Cactus, PGGB, vg pangenome graphs). Implement Tettelin core/accessory/cloud genome decomposition (Tettelin 2005), Heap's law open/closed pangenome modeling, gene presence/absence GWAS (Scoary, pyseer), pangenome graph variant calling (vg, PanGenie), and structural-variation graph indexing. Use when assembling species- or genus-level pan-gene catalogs, separating core from accessory/shell/cloud genes, testing gene-content associations with phenotypes, building pangenome graphs from haplotype-resolved assemblies, calling SVs from pangenome graphs, or selecting between bacterial-pangenome and eukaryotic-pangenome workflows.

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Build, update, and query a persistent project knowledge graph from skills, memory, docs, and code structure — stdlib Python only, no external tools. Dual-mode: skill-library (agent-loom) or application (any consumer repo). Load when the user asks for a knowledge graph, project map, skill relationships, query the graph, update the graph, or trace how components connect. Auto-runs on memory-handoff and project-setup bootstrap. Also triggers on "build the graph", "what connects to X", "map this project".

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Generates, normalizes, and converts bedGraph signal tracks (4-column chrom/start/end/value, 0-based half-open) with bedtools genomecov, deepTools bamCoverage/bamCompare/bigwigCompare, bedtools unionbedg, and UCSC bedGraphToBigWig. Covers why a raw coverage bedGraph is not comparable across samples until normalized, the CPM/RPKM/BPM/RPGC normalization menu and the conserved-total assumption that makes them wrong under a global perturbation, the strict sorted-non-overlapping-chrom.sizes bedGraphToBigWig contract that silently corrupts a bigWig, effective-genome-size selection, and bin-size aliasing. Use when building or normalizing a coverage/signal track from a BAM, comparing tracks across samples or conditions, converting bedGraph to a browser-ready bigWig, or diagnosing a track that looks plausible but reports wrong heights.

日本語の概要は準備中です。原文の説明を表示しています。

Build and analyze pangenomes for prokaryotes (Panaroo, PPanGGOLiN, PEPPAN, GET_HOMOLOGUES, anvi'o pangenomics) and eukaryotes (Minigraph-Cactus, PGGB, vg pangenome graphs). Implement Tettelin core/accessory/cloud genome decomposition (Tettelin 2005), Heap's law open/closed pangenome modeling, gene presence/absence GWAS (Scoary, pyseer), pangenome graph variant calling (vg, PanGenie), and structural-variation graph indexing. Use when assembling species- or genus-level pan-gene catalogs, separating core from accessory/shell/cloud genes, testing gene-content associations with phenotypes, building pangenome graphs from haplotype-resolved assemblies, calling SVs from pangenome graphs, or selecting between bacterial-pangenome and eukaryotic-pangenome workflows.

日本語の概要は準備中です。原文の説明を表示しています。

Parses complex problems into candidate DAG (Directed Acyclic Graph) execution structures. Decomposes tasks into nodes with dependencies and identifies candidate parallelization opportunities. Activate on 'build dag', 'create workflow graph', 'decompose task', 'execution graph', 'task graph'. NOT for simple linear tasks or when an existing DAG structure is provided.

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メモや文字起こしなどの素材を、読者が理解しやすい順序の記事に組み立てます。導入案や段落の役割を対話で確かめ、合意した文章を別ファイルに保存するスキル。

• 散らばったメモを記事にしたいとき
• 文字起こしから記事を組み立てる
• 執筆前に導入の切り口を比べる

Supports PyTorch Geometric (PyG) graph neural networks — node/link/graph classification, message passing (GCN, GAT, GraphSAGE, GIN), heterogeneous graphs, neighbor sampling, and custom datasets. Use when working with torch_geometric, not for general NetworkX analytics or non-graph PyTorch models.

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Hunt AADGraphActivityLogs and MicrosoftGraphActivityLogs in Microsoft Sentinel/Log Analytics using KQL to fingerprint offensive Entra ID enumeration tools such as ROADtools, AADInternals, and AzureHound, including User-Agent signatures, roadrecon endpoint sweeps, and sign-in correlation. Use when investigating suspicious Microsoft Graph API activity, Entra ID reconnaissance, or building Sentinel analytics rules to detect these tools.

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Expert in LangGraph - the production-grade framework for building stateful, multi-actor AI applications. Covers graph construction, state management, cycles and branches, persistence with checkpointers, human-in-the-loop patterns, and the ReAct agent pattern. Used in production at LinkedIn, Uber, and 400+ companies. This is LangChain's recommended approach for building agents. Use when: langgraph, langchain agent, stateful agent, agent graph, react agent.

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Analyze indexed codebases via graph database (neug) and vector index (zvec). Covers call graphs, dependencies, dead code, hotspots, module coupling, architecture reports, semantic search, impact analysis, bug root cause from GitHub issues, class diagrams (UML), and PR review (risk scoring, conflict detection, auto-merge candidates, labeling). Also covers creating, inspecting, and repairing a CodeScope index. Use for: code structure, who calls what, why something changed, similar functions, module boundaries, bug tracing, class relationships, PR risk/conflicts, or any question benefiting from a code knowledge graph. Applies when a `.codegraph` index exists in the workspace, or when the user wants to create one.

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Builds and queries multi-language source and binary code graphs for security analysis. Includes pre-analysis passes for blast radius, taint propagation, privilege boundaries, entry point enumeration, proxy/unresolved-call tracking, type/reference queries, structural traversal, graph diffs, audit augmentation, declared cross-language/FFI/external links via `.trailmark/links.toml`, and SQL schema graphs. Use when analyzing call paths, mapping attack surface, finding complexity hotspots, enumerating entry points, tracing taint propagation, measuring blast radius, importing SARIF/weAudit/binary findings, linking source graphs across language or RPC boundaries, or building a code graph for audit prioritization. Feature-gate version-specific Trailmark APIs before using them; prefer `trailmark.parse.detect_languages()` or `--language auto` when the target language is unknown or polyglot.

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Configure Obsidian graph colors by tag, folder, category, or visibility by updating .obsidian/graph.json. Use for graph colorization; preserve other graph settings and back up before changes.

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Provides authoritative guidance on Amazon Neptune Database and Neptune Analytics for graph, knowledge-graph, and relationship-heavy workloads — fraud detection / fraud rings, agentic memory / chatbot context across sessions, recommendations, identity resolution, Gremlin / openCypher / SPARQL queries, supernode / slow traversal, Neo4j to Neptune migration / APOC compatibility, Neptune Database vs Analytics engine selection, PageRank / community detection, GraphRAG, and connectivity from Lambda / EC2 / applications. Creates and modifies Neptune Database clusters/instances and Neptune Analytics graphs on explicit user confirmation; blocks destructive operations (delete, reset-graph, failover, major upgrade) and redirects to change-control.

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Use whenever the agent needs to add, create, hand-author, patch, or place Motion Graphic JSX assets in a OpenChatCut project. This is the direct-authoring path: use create_motion_graphic_from_code / edit_asset / edit_item, not motion-graphic-gen or submit_motion_graphic. Covers project/timeline intake, project visual language, editable properties, asset binding, inline JSX authoring, existing asset updates, timeline placement, and verification.

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Reference for querying the Atlas knowledge graph through its MCP tools — the SECONDARY enrichment/comparison layer that adds best-practice context to systems you have ALREADY scanned from your real sources (`az`, repos, dirs). Use when you need to look up nodes, edges, kinds, clusters, stats, or wiki pages in Atlas to compare against your real inventory. (atlas graph, query atlas, atlas mcp, search the graph, graph neighbors, atlas record, atlas kinds, enrichment layer)

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Query the local AST-derived code graph (functions, classes, calls, imports) for structural codebase questions — what calls X, what does Y import, where is Z defined, blast radius of a change. The graph rebuilds automatically after each agent turn; use hivemind_graph_search and hivemind_graph_neighborhood tools (no manual build step).

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Use when the user types /agentlas-graph, /agentlas graph, or /hep-graph to create, list, inspect, or run Agentlas automation graphs.

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INVOKE THIS SKILL when using the langgraph CLI to scaffold, develop, build, or deploy LangGraph applications. Covers langgraph new, dev, build, up, deploy, and langgraph.json configuration.

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KEGGGraph is an interface between KEGG pathway and graph object as well as a collection of tools to analyze, dissect and visualize these graphs. It parses the regularly updated KGML (KEGG XML) files into graph models maintaining all essenti

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Plan shoot-ready Amazon product photography, listing image sets, infographics, lifestyle scenes, and production briefs. Use when a seller asks for an Amazon photo shot list, creative direction, image-pack plan, photography budget, DIY-versus-done-for-you decision, or handoff to a photographer or image-generation workflow. Do not use for listing copy or image-only performance auditing.

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Membangun motion graphic sinematik di browser (promo video, opener, intro, bumper, kinetic typography, explainer/video penjelasan bergambar 16:9 atau 9:16) memakai HTML + CSS + GSAP (+ Three.js bila perlu), dengan hasil yang bergerak seperti video sungguhan — bukan slide presentasi. Gunakan skill ini setiap kali user meminta "video promo", "opener", "intro animasi", "motion graphic", "bumper", "kinetic typography", "animasi teks sinematik", "explainer", "video penjelasan" (jurnalisme visual, kartun edukasi, kolase), atau menunjukkan referensi video promosi/explainer dan ingin dibuatkan versi web-nya — bahkan bila mereka tidak menyebut kata "motion graphic" secara eksplisit. Juga gunakan bila user mengeluh hasil animasi web "seperti PPT/presentasi" dan ingin lebih sinematik, atau ingin merender animasi web menjadi file video MP4, atau ingin explainer kartun/animasi dibangun LANGSUNG di After Effects lewat bridge/MCP Higgsfield.

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Use `graphify-dotnet` to generate codebase knowledge graphs, architecture snapshots, and exportable repository maps from .NET or polyglot source trees, with optional AI-enriched semantic relationships. USE FOR: graphify commands; graph JSON, HTML, SVG, Cypher, Markdown, and Obsidian exports; repository map and architecture snapshot generation. DO NOT USE FOR: unrelated stacks; generic tasks that do not need this specific guidance. INVOKES: inspect the repository context, edit targeted files, and run relevant build, test, lint, or validation commands when changes are made.

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Create distinctive Photo Relic editorial artworks from user-provided photographs: preserve the real photo and pair it with a recognizable, artful abstract relic shaped like memory, modern printmaking, quiet Eastern restraint, and source-derived light. Use when the user asks to turn a photo into minimal art, photographic relic posters, abstract editorial photography, gallery-like photo posters, Douyin-ready art series covers, graphic photo abstraction, afterimage compositions, or similar visual treatments while keeping the original photograph truthful.

日本語の概要は準備中です。原文の説明を表示しています。

Analyze indexed codebases via graph database (neug) and vector index (zvec). Covers call graphs, dependencies, dead code, hotspots, module coupling, architecture reports, semantic search, impact analysis, bug root cause from GitHub issues, class diagrams (UML), and PR review (risk scoring, conflict detection, auto-merge candidates, labeling). Also covers creating, inspecting, and repairing a CodeScope index. Use for: code structure, who calls what, why something changed, similar functions, module boundaries, bug tracing, class relationships, PR risk/conflicts, or any question benefiting from a code knowledge graph. Applies when a `.codegraph` index exists in the workspace, or when the user wants to create one.

日本語の概要は準備中です。原文の説明を表示しています。