「t cells」の検索結果

Read, write, edit, and format Excel files (.xlsx). Create spreadsheets, manipulate data, apply formatting, manage sheets, merge cells, find/replace, and export to CSV/JSON/Markdown. Use for any Excel file manipulation task.

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Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or following scverse/scanpy best practices for single-cell analysis.

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Machine learning toolkit for genomic interval (BED) data; use it when you need to tokenize BED collections and train embeddings for regions/cells/labels, build consensus peak universes, or run similarity search and downstream ML on chromatin accessibility datasets.

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Extract every hidden assumption from a plan or document and put a price on each one — what it costs if wrong, what it costs to test. Use when about to commit to anything whose author says 'obviously' or whose spreadsheet has hardcoded cells: the bounty hunt makes the invisible load-bearing beliefs explicit and tells you which three to test this week. Produces the assumption ledger (priced and ranked), the cheapest test for each dangerous one, and the document's honest confidence statement.

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Run all reference benchmarks under benchmarks/eval/ and refresh the reference-table cells in benchmark_*.py. Auto-detects host hardware (H200/H100/H800/...). For each row's matching hw entry: replace cells in place. For new hardware or a new workload tag: append a new row to the section's table. Local-Pipeline-Result tables are skipped. One slash command runs everything end-to-end and auto-commits.

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Assign cell types from marker expression in IMC/MIBI data using clustering (PhenoGraph/FlowSOM/Leiden/Pixie), marker-based probabilistic classifiers (Astir), or image-context CNNs (CellSighter), covering the double-positive segmentation artifact, lineage-vs-state markers, the two spillover types, and why a "cell type" in imaging is conditioned on a segmentation guess. Use when phenotyping segmented IMC cells, choosing clustering vs classification, diagnosing implausible double-positive populations, separating lineage from functional markers, or transferring labels across a cohort.

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Segment single cells from multiplexed IMC/MIBI tissue images using Mesmer/DeepCell, Cellpose, or ilastik+CellProfiler, covering whole-cell vs nuclear segmentation, the summed-membrane-channel decision, nuclear-expansion bias, lateral spillover, resolution-floor parameters, and downstream-proxy evaluation. Use when delineating cells after preprocessing, choosing a segmentation model, building a cell mask for quantification, diagnosing impossible double-positive populations, or troubleshooting over/under-segmentation.

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Load this first for any task involving images, pictures, photos, scans, frames, volumes, or visual data — including reading, writing, filtering, enhancing, denoising, sharpening, deblurring, thresholding, segmenting, masking, detecting, finding or counting objects, removing backgrounds, measuring, comparing, registering, stitching, aligning, cropping, resizing, transforming, or analyzing. Use for image I/O (TIFF, PNG, JPEG, RAW, HDR), histograms, edge detection, color processing, morphology, geometric transforms, deep learning for images, quality assessment, and 3-D volume processing. Also triggers when users describe image problems (dark, noisy, blurry, low contrast, uneven lighting, hazy, color cast) or data exploration tasks (folder of images, characterize data, understand format). Handles microscopy (cells, particles) and general scientific imaging. Routes to sibling skills for medical imaging (DICOM, NIfTI), hyperspectral data, and visual inspection.

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Monocle performs differential expression and time-series analysis for single-cell expression experiments. It orders individual cells according to progress through a biological process, without knowing ahead of time which genes define progre

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Multivariate methods are well suited to large omics data sets where the number of variables (e.g. genes, proteins, metabolites) is much larger than the number of samples (patients, cells, mice). They have the appealing properties of reducin

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Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or following scverse/scanpy best practices for single-cell analysis.

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Trading Super Intelligence Team. Named real-world personas across 8 cells. Built local-first (LM Studio) and validator-gated. Illustrative composites; see DISCLAIMER.md.

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Your AI research and engineering brain trust. 59 named personas across 8 cells covering frontier labs, applied product, model architecture, reasoning/RL/agents, alignment and interpretability, theory and science of DL, multimodal and…

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Strategy Super Intelligence Team. Named real-world personas across 7 cells. Built local-first (LM Studio) and validator-gated. Illustrative composites; see DISCLAIMER.md.

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Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.

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Harmony batch correction for scRNA-seq and other omics. Removes batch effects from PCA embeddings while preserving biology. Run after PCA, before UMAP. Scales to millions of cells. Python (harmonypy, scanpy) and R (Seurat).

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DL cell/nucleus segmentation for fluorescence and brightfield microscopy. Pre-trained models (cyto3, nuclei, tissuenet) and a generalist flow-based algorithm segment cells without retraining. Outputs label masks for morphology and tracking. Use scikit-image watershed for rule-based; Cellpose when DL generalization across staining is needed.

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Compare evaluated runs in a retort experiment along factor dimensions. Surfaces effects of each factor, aggregates across replicates, and highlights cells that diverge qualitatively — complementing (not replacing) retort's ANOVA analysis.

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Think and work like an expert Food Microbiologist. Use when a task calls for Food Microbiologist judgment. Reasons from food as a hurdle-governed matrix of water activity, pH, and redox through BAM/ISO reference methods, c/n/m/M sampling plans, PMA-v-qPCR, and ComBase kinetics while treating VBNC and injured cells, post-process contamination, matrix inhibition, and unconfirmed PCR hits as first-class failure modes.

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Generate and parse Excel spreadsheets with ExcelJS — create workbooks with multiple sheets, styled cells, formulas, charts, images, and conditional formatting. Use when tasks involve exporting application data to .xlsx, building financial reports, parsing uploaded spreadsheets, or creating data import/export pipelines.

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Cards, rows, tiles and cells are fixed slot models that stay aligned when content length varies. Use when building or reviewing any repeated component.

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Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.

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Use when you need CrowdStrike Falcon Intelligence on an indicator (IOC reputation for an IP, domain, hash, or URL — malicious confidence, linked actors, malware families, reports) OR on an adversary (threat-actor profile, origin/target search, MITRE ATT&CK TTPs, finished intel reports). Answers questions like "look up 1.1.1.1", "what TTPs does Charming Kitten use?", "which threat actors operate from Russia?", and "latest report on Mustang Panda". Commonly invoked by the four /*-investigation skills, /ioc-enrichment-workflow, /threat-actor-profiling, and the regional espionage cells. Other agents/skills can chain this for vendor-authoritative actor and finished-intel context. Requires a Falcon Intelligence subscription.

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Expert-level immunology covering innate and adaptive immunity, antibody structure and function, T cell biology, immune evasion, vaccines, autoimmunity, and immunotherapy.

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