Predict genome-wide functional tracks (RNA-seq, CAGE, DNase, ChIP) from DNA sequence with Borzoi. Use this skill when: (1) Scoring the regulatory effect of a variant on expression/accessibility, (2) Generating predicted coverage tracks for a locus, (3) Prioritising non-coding variants by predicted track delta.
日本語の概要は準備中です。原文の説明を表示しています。
aipoch/open-science☆ 4,8402026年10月14日 更新
Predict protein structure for monomers and multimers with AlphaFold2 via the ColabFold runner (Mirdita et al. 2022, github.com/sokrypton/ColabFold; AlphaFold2 Jumper et al. 2021). Reach for this skill to fold a sequence or complex with the AF2/AF2-Multimer evoformer, to validate designed sequences by self-consistency pLDDT, ipTM, and RMSD, or to run a quick MSA-backed prediction using the public MMseqs2 server.
日本語の概要は準備中です。原文の説明を表示しています。
aipoch/open-science☆ 4,8402026年10月14日 更新
Structure prediction using OpenFold3, an open-weights PyTorch reproduction of AlphaFold3 from the AlQuraishi Lab. Use this skill when predicting protein/nucleic-acid/ligand complex structures with an Apache-2.0-licensed AF3 reimplementation.
日本語の概要は準備中です。原文の説明を表示しています。
aipoch/open-science☆ 4,8402026年10月14日 更新
Structure prediction for protein, nucleic-acid, and small-molecule complexes with the Chai-1 foundation model (Chai Discovery 2024, github.com/chaidiscovery/chai-lab). Reach for this skill to predict an antibody-antigen or protein-ligand complex from a single FASTA, to re-fold designed binders as an AlphaFold-multimer alternative, or to drive co-folding from Python for batched campaigns on a GPU.
日本語の概要は準備中です。原文の説明を表示しています。
aipoch/open-science☆ 4,8402026年10月14日 更新
Score, embed, and generate DNA sequences with Evo 2, a long-context genomic foundation model. Use this skill when: (1) Computing per-nucleotide or per-sequence likelihoods for variant effect scoring, (2) Embedding genomic windows for downstream classification, (3) Generating DNA conditioned on a prefix, (4) Scoring regulatory or coding regions across species.
日本語の概要は準備中です。原文の説明を表示しています。
aipoch/open-science☆ 4,8402026年10月14日 更新
Embed proteins with Meta AI's ESM-2 (`fair-esm` package). Use this skill when: (1) Extracting per-residue or per-sequence embeddings for downstream ML, (2) Masked-LM likelihood / mutation effect scoring, (3) Contact prediction from a sequence.
日本語の概要は準備中です。原文の説明を表示しています。
aipoch/open-science☆ 4,8402026年10月14日 更新
Use when the user wants to create or manage a Specialist agent or create, revise, publish, or delete a Skill through the conversational `/Customize` entry. Routes Skill work to the internal skill-creator and handles Specialist work through the JavaScript host.agents SDK.
日本語の概要は準備中です。原文の説明を表示しています。
aipoch/open-science☆ 4,8402026年10月14日 更新
Embed and annotate single-cell expression data with scGPT, a foundation model for single-cell biology. Use this skill when: (1) Producing cell embeddings from an AnnData for clustering/integration, (2) Zero-shot or fine-tuned cell-type annotation, (3) Gene-level representation for perturbation/GRN tasks. For probabilistic single-cell models (scVI etc.), use the scvi-tools library.
日本語の概要は準備中です。原文の説明を表示しています。
aipoch/open-science☆ 4,8402026年10月14日 更新
Research computing toolkit for optoelectronic information science and engineering, MATLAB/Octave, Python scientific analysis, signal processing, image processing, statistics, simulation, optimization, publication figures, sensor/time-series data, citation lookup, and common scientific libraries. Use when the user asks for MATLAB code, scientific Python, data analysis, plots, simulations, formulas, statistics, machine learning, optical/physical/materials computation, or reproducible research workflows.
日本語の概要は準備中です。原文の説明を表示しています。
zLanqing/codex-claude-academic-skills☆ 4,8392026年5月14日 更新
Meta-skill for publication-ready figures. Use when creating journal submission figures requiring multi-panel layouts, significance annotations, error bars, colorblind-safe palettes, and specific journal formatting (Nature, Science, Cell). Orchestrates matplotlib/seaborn/plotly with publication styles. For quick exploration use seaborn or plotly directly.
日本語の概要は準備中です。原文の説明を表示しています。
zLanqing/codex-claude-academic-skills☆ 4,8392026年5月14日 更新
Agent D4 - Measurement Instrument Developer - Scale construction and psychometric validation. Covers item development, validity evidence, and reliability testing for social science research.
日本語の概要は準備中です。原文の説明を表示しています。
brycewang-stanford/Auto-Empirical-Research-Skills☆ 4,6072026年10月12日 更新
Diverga Dashboard - Live configuration status and feature overview. 24 specialized agents across 9 categories for social science research. VS methodology prevents mode collapse. Human checkpoints enforce human-in-the-loop decisions. Triggers: /diverga, diverga dashboard, diverga status
日本語の概要は準備中です。原文の説明を表示しています。
brycewang-stanford/Auto-Empirical-Research-Skills☆ 4,6072026年10月12日 更新
APSA style checker for Quarto (.qmd) files. Checks numbers, capitalization, abbreviations, italics, in-text citations, titles of works, neutral and unbiased language, and APSA-specific terminology against the APSA Style Manual for Political Science (2018, updated 2023). Produces a structured markdown report organized by document section — never modifies the source file. Use when asked to check APSA style, fix citations, review capitalization, check number formatting, or flag biased language in a .qmd document. For grammar, spelling, and punctuation, use the proofread skill instead. Supports an optional output-file argument and an optional @sec-label argument to restrict checking to one section.
日本語の概要は準備中です。原文の説明を表示しています。
brycewang-stanford/Auto-Empirical-Research-Skills☆ 4,6072026年10月12日 更新
Interactive setup wizard that configures a new project for the social-science-research plugin. Asks the user questions about their field, institution, journals, datasets, key researchers, and R color palette, then writes the answers into references/domain-profile.md and CLAUDE.md. Make sure to use this skill first whenever a user is starting fresh or wants to configure the plugin. Triggers include: "set up my project", "configure the plugin", "run setup", "initialize this project", "I just installed the plugin", "set my field", "set my institution", "configure my domain profile", or any request to personalize the plugin for a specific research context.
日本語の概要は準備中です。原文の説明を表示しています。
brycewang-stanford/Auto-Empirical-Research-Skills☆ 4,6072026年10月12日 更新
Review research code for reproducibility and quality, extract the paper's main empirical claims, compare paper to code, and write a constructive markdown report. Designed for social science / economics projects with LaTeX papers and Stata, R, or Python code.
日本語の概要は準備中です。原文の説明を表示しています。
brycewang-stanford/Auto-Empirical-Research-Skills☆ 4,6072026年10月12日 更新
This skill covers causal machine learning methods in applied economics and quantitative social science. Use when implementing or choosing between modern ML-based causal estimators — including double machine learning, DML, partially linear models, interactive regression models, cross-fitting, Neyman orthogonality, debiased ML, causal forests, generalized random forest, GRF, honest causal trees, AIPW with machine learning, doubly robust with machine learning, DR-Learner, T-Learner, S-Learner, X-Learner, meta-learners, heterogeneous treatment effects, conditional average treatment effect, CATE, HTE, high-dimensional controls, LASSO controls, post-LASSO, post-double selection, Belloni-Chernozhukov-Hansen, Riesz representer, Chernozhukov, sample splitting, econml, DoubleML package, or any combination of machine learning and causal inference.
日本語の概要は準備中です。原文の説明を表示しています。
brycewang-stanford/Auto-Empirical-Research-Skills☆ 4,6072026年10月12日 更新
This skill should be used when the user asks to "search for academic papers", "find working papers on SSRN", "look up a DOI", "download paper PDF", "check open access availability", "search NBER papers", "find arXiv preprints", or "search CrossRef". Provides unified search, metadata retrieval, and PDF download across arXiv, NBER, SSRN, CrossRef, OpenAlex, Unpaywall, and Semantic Scholar. Covers economics, finance, social science, CS/AI, and all academic disciplines.
日本語の概要は準備中です。原文の説明を表示しています。
brycewang-stanford/Auto-Empirical-Research-Skills☆ 4,6072026年10月12日 更新
This skill covers Bayesian estimation and inference in quantitative social science. Use when the user is specifying priors, running MCMC, diagnosing chain convergence, or reporting posterior summaries — including hierarchical models, Bayesian structural models, and small-sample settings where priors regularize. Triggers on "Bayesian estimation", "Bayesian inference", "MCMC", "Markov chain Monte Carlo", "Stan", "PyMC", "NumPyro", "prior", "posterior", "credible interval", "Bayesian structural", "Bayesian BLP", "Bayesian DSGE", "hierarchical model", "random effects Bayesian", "posterior predictive check", "Bayes factor", "prior predictive check", "NUTS", "HMC", "Hamiltonian Monte Carlo", "R-hat", "rhat", "effective sample size", "ESS", "Bayesian calibration", "posterior distribution", "prior elicitation", "weakly informative prior", "brms", "rstanarm", "cmdstanpy", "pymc", "arviz".
日本語の概要は準備中です。原文の説明を表示しています。
brycewang-stanford/Auto-Empirical-Research-Skills☆ 4,6072026年10月12日 更新
中英双语学术降 AIGC / bilingual academic de-AIGC skill. Removes AI-generated writing signatures from empirical papers in economics, management, and the social sciences — in both English and Chinese. Covers Turnitin AI, GPTZero, Originality.ai on the English side and 知网 AMLC, 万方, 维普 on the Chinese side. Uses a six-step loop (intake → audit → claim-evidence check → differentiated rewrite → five-dimension self-score → cold-reader recheck) with two pattern libraries (22 English + 17 Chinese patterns), section-by-section strategies for empirical papers, and hard protections that keep every number, coefficient, and citation intact. Since 2026-08 it also carries a provenance layer (去水印): deterministic, CJK-safe cleaning of invisible-character carriers and file metadata (docx / png / jpg / svg / pdf, incl. C2PA), an honest account of Claude's statistical text watermark, and an author "ownership pass" — it never claims a text is watermark-free.
日本語の概要は準備中です。原文の説明を表示しています。
brycewang-stanford/Auto-Empirical-Research-Skills☆ 4,6072026年10月12日 更新
Generate academic research proposals for PhD applications. Use when user asks to "write a research proposal", "create PhD proposal", "generate research plan", "撰写研究计划", "写博士申请", "doctoral proposal", or mentions specific research topics for PhD application. Supports STEM, humanities, and social sciences with field-specific adaptations. Follows Nature Reviews-style academic writing conventions. Supports both English and Chinese output based on user preference.
日本語の概要は準備中です。原文の説明を表示しています。
brycewang-stanford/Auto-Empirical-Research-Skills☆ 4,6072026年10月12日 更新
Meta-skill for publication-ready figures. Use when creating journal submission figures requiring multi-panel layouts, significance annotations, error bars, colorblind-safe palettes, and specific journal formatting (Nature, Science, Cell). Orchestrates matplotlib/seaborn/plotly with publication styles. For quick exploration use seaborn or plotly directly.
日本語の概要は準備中です。原文の説明を表示しています。
spacering-net/codeg☆ 3,9352026年10月13日 更新
Statistics, probability, linear algebra, and mathematical foundations for data science
日本語の概要は準備中です。原文の説明を表示しています。
foryourhealth111-pixel/Vibe-Skills☆ 3,6752026年8月31日 更新
World-class data science skill for statistical modeling, experimentation, causal inference, and advanced analytics. Expertise in Python (NumPy, Pandas, Scikit-learn), R, SQL, statistical methods, A/B testing, time series, and business intelligence. Includes experiment design, feature engineering, model evaluation, and stakeholder communication. Use when designing experiments, building predictive models, performing causal analysis, or driving data-driven decisions.
日本語の概要は準備中です。原文の説明を表示しています。
foryourhealth111-pixel/Vibe-Skills☆ 3,6752026年8月31日 更新
Master discrete mathematics, logic, formal proofs, and computational thinking. Build the mathematical foundation for all computer science.
日本語の概要は準備中です。原文の説明を表示しています。
foryourhealth111-pixel/Vibe-Skills☆ 3,6752026年8月31日 更新