Python data pipelines with modular architecture. Use for content workflows, batch jobs, or Google Sheets/Drive integration.
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Python data pipelines with modular architecture. Use for content workflows, batch jobs, or Google Sheets/Drive integration.
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Generate structured planning documentation for web projects with context-safe phases, verification criteria, and exit conditions. Creates IMPLEMENTATION_PHASES.md plus conditional docs (DATABASE_SCHEMA, API_ENDPOINTS, UI_COMPONENTS, CRITICAL_WORKFLOWS). Use when: starting new Cloudflare Workers/React projects, adding major features to existing apps, breaking large work into manageable phases, or need verified planning before coding begins.
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Digital pathology image processing toolkit for whole slide images (WSI). Use this skill when working with histopathology slides, processing H&E or IHC stained tissue images, extracting tiles from gigapixel pathology images, detecting tissue regions, segmenting tissue masks, or preparing datasets for computational pathology deep learning pipelines. Applies to WSI formats (SVS, TIFF, NDPI), tile-based analysis, and histological image preprocessing workflows.
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DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.
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Implement authentication and authorization with Better Auth - a framework-agnostic TypeScript authentication framework. Features include email/password authentication with verification, OAuth providers (Google, GitHub, Discord, etc.), two-factor authentication (TOTP, SMS), passkeys/WebAuthn support, session management, role-based access control (RBAC), rate limiting, and database adapters. Use when adding authentication to applications, implementing OAuth flows, setting up 2FA/MFA, managing user sessions, configuring authorization rules, or building secure authentication systems for web applications.
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Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.
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smina molecular docking CLI. AutoDock Vina fork with customizable scoring functions, native SDF/MOL2/PDB ligand input, autoboxing, local energy minimization, and per-atom score breakdowns. Pipeline: receptor PDBQT prep -> ligand prep (RDKit/OpenBabel) -> dock via autobox or explicit grid -> rescore/minimize with custom scoring -> rank poses by affinity. Choose smina over Vina when you need custom scoring terms (--custom_scoring), local optimization of an existing pose (--local_only), per-atom contributions (--atom_term_data), or SDF/MOL2 ligands without manual PDBQT conversion. For unknown binding sites use diffdock; for the Python-bindings/Vinardo workflow use autodock-vina-docking.
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Query PubChem (110M+ compounds) directly via the PUG-REST/JSON API with plain `requests` — no SDK install required. Search by name/CID/SMILES/InChIKey/formula, retrieve properties (MW, XLogP, TPSA, H-bond counts), do similarity/substructure searches with async ListKey polling, fetch synonyms, descriptions, assay summaries, and download SDF/PNG. For local cheminformatics use rdkit; for bioactivity-centric workflows use chembl-database-bioactivity.
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Three-tiered approach to omics data analysis (transcriptomics, proteomics) covering validated pipelines, standard workflows, and custom methods
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Designing scientific schematics, diagrams, and graphical abstracts. Covers tool selection (BioRender, Inkscape, Affinity, PowerPoint), design principles for pathway diagrams, mechanism schematics, experimental workflows, and journal graphical abstracts. Includes composition, icon sourcing, color for biological entities, and accessibility. Use when creating illustrative (not data-driven) scientific figures.
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Read, decompose, and analyze IEEE-style papers using routed technical-reading workflows. Use when extracting problem setting, object-method-condition logic, contributions, method pipeline, equations, datasets, baselines, metrics, ablations, limitations, replication details, citation role, related-work positioning, implementation notes, or reviewer-style assessment from a paper, PDF, abstract, or manuscript excerpt.
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Create n8n workflow for daily task assignment from PTO engineer to foreman via Telegram bot with status reporting.
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Build Telegram bots for construction field workers. Real-time reporting, photo uploads, task assignments, progress tracking. Integrate with n8n for automated workflows.
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Email generation for construction workflows: RFI responses, submittal transmittals, meeting notices, change order notifications. Professional templates with context-aware content.
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Automate daily construction report generation using n8n workflow automation.
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Build multi-agent AI systems for construction estimation. Use CrewAI/LangGraph to orchestrate specialized agents: QTO agent, pricing agent, validation agent. Automate complex estimation workflows.
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Link schedule activities to cost items. Create cost-loaded schedules, generate cash flow curves, and track earned value.
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CAD/BIM takeoff in OpenConstructionERP: upload Revit/IFC/DWG/DGN models, browse elements, bulk-link them to BOQ lines, measure DWG drawings and PDF plans, and push quantities into the estimate. Use for any model-based quantification workflow.
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Field operations in OpenConstructionERP: punch list, daily diary, HSE observations and task tracking on site. Use when automating construction site workflows (deficiencies, diaries, safety, site tasks).
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Detect and analyze geometric clashes between BIM elements. Identify hard clashes, soft clashes, and workflow conflicts using spatial analysis and rule-based detection.
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Portfolio mapping and model coordination in OpenConstructionERP: the 3D geo hub (Cesium), the coordination hub with clash AI, and geo-anchored projects. Use for multi-project portfolio views and BIM clash workflows.
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Orchestrate multiple AI agents for construction workflows: estimator, scheduler, document, QA and safety agents coordinated by a supervisor agent, with human checkpoints. Use when automating end-to-end project processes with agentic AI.
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Optimize construction site logistics including material delivery scheduling, crane positioning, storage area allocation, and traffic flow using operations research and simulation.
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Analyze and predict construction change orders using ML. Classify change order types, predict costs and schedule impacts, identify patterns, and optimize approval workflows.
日本語の概要は準備中です。原文の説明を表示しています。