AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.
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Core Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities, coordinates, FITS I/O, tables, time systems, WCS, and cosmology. Use when implementing or debugging astronomical data analysis code with Astropy.
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Astropy is the core Python package for astronomy, providing essential functionality for astronomical research and data analysis. Use astropy for coordinate transformations, unit and quantity calculations, FITS file operations, cosmological calculations, precise time handling, tabular data manipulation, and astronomical image processing.
Use astropy when tasks involve:
import astropy.units as u
from astropy.coordinates import SkyCoord
from astropy.time import Time
from astropy.io import fits
from astropy.table import Table
from astropy.cosmology import Planck18
# Units and quantities
distance = 100 * u.pc
distance_km = distance.to(u.km)
# Coordinates
coord = SkyCoord(ra=10.5*u.degree, dec=41.2*u.degree, frame='icrs')
coord_galactic = coord.galactic
# Time
t = Time('2023-01-15 12:30:00')
jd = t.jd # Julian Date
# FITS files
data = fits.getdata('image.fits')
header = fits.getheader('image.fits')
# Tables
table = Table.read('catalog.fits')
# Cosmology
d_L = Planck18.luminosity_distance(z=1.0)
astropy.units)Handle physical quantities with units, perform unit conversions, and ensure dimensional consistency in calculations.
Key operations:
.to() methodSee: references/units.md for comprehensive documentation, unit systems, equivalencies, performance optimization, and unit arithmetic.
astropy.coordinates)Represent celestial positions and transform between different coordinate frames.
Key operations:
SkyCoord in any frame (ICRS, Galactic, FK5, AltAz, etc.)See: references/coordinates.md for detailed coordinate frame descriptions, transformations, observer-dependent frames (AltAz), catalog matching, and performance tips.
astropy.cosmology)Perform cosmological calculations using standard cosmological models.
Key operations:
See: references/cosmology.md for available models, distance calculations, time calculations, density parameters, and neutrino effects.
astropy.io.fits)Read, write, and manipulate FITS (Flexible Image Transport System) files.
Key operations:
See: references/fits.md for comprehensive file operations, header manipulation, image and table handling, multi-extension files, and performance considerations.
astropy.table)Work with tabular data with support for units, metadata, and various file formats.
Key operations:
See: references/tables.md for table creation, I/O operations, data manipulation, sorting, filtering, joins, grouping, and performance tips.
astropy.time)Precise time representation and conversion between time scales and formats.
Key operations:
See: references/time.md for time formats, time scales, conversions, arithmetic, observing features, and precision handling.
astropy.wcs)Transform between pixel coordinates in images and world coordinates.
Key operations:
See: references/wcs_and_other_modules.md for WCS operations and transformations.
The references/wcs_and_other_modules.md file also covers:
Containers for n-dimensional datasets with metadata, uncertainty, masking, and WCS information.
Framework for creating and fitting mathematical models to astronomical data.
Tools for astronomical image display with appropriate stretching and scaling.
Physical and astronomical constants with proper units (speed of light, solar mass, Planck constant, etc.).
Image processing kernels for smoothing and filtering.
Robust statistical functions including sigma clipping and outlier rejection.
# Reproducible install against the current stable release
uv pip install "astropy==7.2.0"
# Recommended optional dependencies for plotting and common workflows
uv pip install "astropy[recommended]==7.2.0"
# Full optional dependency set for broad astronomy workflows
uv pip install "astropy[all]==7.2.0"
Astropy 7.2.0 requires Python 3.11+ and depends on NumPy, PyERFA, PyYAML, and packaging. Use an isolated virtual environment; do not install Astropy with elevated privileges.
Note that the [recommended] and [all] extras pull in transitive dependencies (matplotlib, scipy, etc.) at unpinned versions. For reproducible production environments, pin the full dependency tree with a lockfile (uv lock in a project, or uv pip compile for requirements files) and review the resolved versions before deploying.
from astropy.coordinates import SkyCoord
import astropy.units as u
# Create coordinate
c = SkyCoord(ra='05h23m34.5s', dec='-69d45m22s', frame='icrs')
# Transform to galactic
c_gal = c.galactic
print(f"l={c_gal.l.deg}, b={c_gal.b.deg}")
# Transform to alt-az (requires time and location)
from astropy.time import Time
from astropy.coordinates import EarthLocation, AltAz
observing_time = Time('2023-06-15 23:00:00')
observing_location = EarthLocation(lat=40*u.deg, lon=-120*u.deg)
aa_frame = AltAz(obstime=observing_time, location=observing_location)
c_altaz = c.transform_to(aa_frame)
print(f"Alt={c_altaz.alt.deg}, Az={c_altaz.az.deg}")
from astropy.io import fits
import numpy as np
# Open FITS file
with fits.open('observation.fits') as hdul:
# Display structure
hdul.info()
# Get image data and header
data = hdul[1].data
header = hdul[1].header
# Access header values
exptime = header['EXPTIME']
filter_name = header['FILTER']
# Analyze data
mean = np.mean(data)
median = np.median(data)
print(f"Mean: {mean}, Median: {median}")
from astropy.cosmology import Planck18
import astropy.units as u
import numpy as np
# Calculate distances at z=1.5
z = 1.5
d_L = Planck18.luminosity_distance(z)
d_A = Planck18.angular_diameter_distance(z)
print(f"Luminosity distance: {d_L}")
print(f"Angular diameter distance: {d_A}")
# Age of universe at that redshift
age = Planck18.age(z)
print(f"Age at z={z}: {age.to(u.Gyr)}")
# Lookback time
t_lookback = Planck18.lookback_time(z)
print(f"Lookback time: {t_lookback.to(u.Gyr)}")
from astropy.table import Table
from astropy.coordinates import SkyCoord, match_coordinates_sky
import astropy.units as u
# Read catalogs
cat1 = Table.read('catalog1.fits')
cat2 = Table.read('catalog2.fits')
# Create coordinate objects
coords1 = SkyCoord(ra=cat1['RA']*u.degree, dec=cat1['DEC']*u.degree)
coords2 = SkyCoord(ra=cat2['RA']*u.degree, dec=cat2['DEC']*u.degree)
# Find matches
idx, sep, _ = coords1.match_to_catalog_sky(coords2)
# Filter by separation threshold
max_sep = 1 * u.arcsec
matches = sep < max_sep
# Create matched catalogs
cat1_matched = cat1[matches]
cat2_matched = cat2[idx[matches]]
print(f"Found {len(cat1_matched)} matches")
SkyCoord.from_name(), EarthLocation.of_site(refresh_cache=True), EarthLocation.of_address(), download_file(), remote FITS reads, and some IERS time/coordinate transforms can contact external services or update local caches. Avoid sending sensitive target names, addresses, URLs, or proprietary file locations to third-party services. When working with potentially sensitive targets or data locations, confirm with the user before making these network calls.astropy==7.2.0 for shared environments; update pins intentionally after reviewing release notes.astropy.cosmology submodule shims (astropy.cosmology.flrw, .core, .funcs, .connect, .parameter) are removed — import everything directly from astropy.cosmology (e.g., from astropy.cosmology import FlatLambdaCDM, z_at_value)astropy.constants defaults change from CODATA 2018 to CODATA 2022; pin a constants version via the astropyconst science states if reproducibility mattersastropy.test(), TestRunner) is formally deprecated — invoke pytest directly.loc element (t.loc["b", 2]) — use t.loc.with_index("b")[2] instead (removal planned for 9.0); astropy.utils.isiterable() — use numpy.iterable()(Bin)Table.update, _ExtensionHDU, _NonstandardExtHDU, and the tile_size argument for CompImageHDU; CompImageHeader is deprecated. Avoid those legacy patterns in new examples.recommended for common plotting/scientific dependencies and all only when a broad optional feature set is needed.For detailed information on specific modules:
references/units.md - Units, quantities, conversions, and equivalenciesreferences/coordinates.md - Coordinate systems, transformations, and catalog matchingreferences/cosmology.md - Cosmological models and calculationsreferences/fits.md - FITS file operations and manipulationreferences/tables.md - Table creation, I/O, and operationsreferences/time.md - Time formats, scales, and calculationsreferences/wcs_and_other_modules.md - WCS, NDData, modeling, visualization, constants, and utilitiesまだレビューはありません。使ってみた感想をお寄せください。
概要と使いどころ
AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.
日本語の概要は準備中です。原文の説明を表示しています。
Improve the clarity and voice of AI-assisted academic writing (papers, theses, rebuttals) and
日本語の概要は準備中です。原文の説明を表示しています。
12-agent academic paper writing pipeline. 11 modes (full/plan/outline/revision/revision-coach/abstract/lit-review/format-convert/citation-check/disclosure/rebuttal-audit). 6 paper types, 5 citation formats, bilingual abstracts, LaTeX/DOCX-via-Pandoc/PDF output. Style Calibration + Writing Quality Check + Anti-Patterns with IRON RULE markers. Triggers: write paper, academic paper, guide my paper, parse reviews, audit my rebuttal, check my response draft, AI disclosure, 寫論文, 學術論文, 引導我寫論文, 審查意見, 評估回覆, 논문 작성, 초록 작성, 논문 수정, 논문 계획을 도와줘, 심사 의견 반영, 답변서 점검, AI 사용 고지.
日本語の概要は準備中です。原文の説明を表示しています。
Systematic writing framework for philosophy and interdisciplinary academic papers from optimized outline to submission-ready manuscript. Use when users want to: (1) write a paper from a detailed outline, (2) ensure quality control during writing, (3) maintain consistency across chapters, (4) prepare a submission-ready manuscript, or (5) systematically execute a planned paper. Triggered by phrases like 'write the paper from this outline,' 'compose the full manuscript,' 'execute the outline,' or when users have completed strategic planning (academic-paper-strategist skill) and are ready to write. Takes optimized outline as input; outputs complete manuscript with iterative quality checks.
日本語の概要は準備中です。原文の説明を表示しています。
Multi-perspective academic paper review with dynamic reviewer personas. Runs a 5-seat, role-separated review panel (Journal-Fit Reviewer + 3 peer-review roles + Devil's Advocate) with field-specific expertise; role separation is not a claim of independent error processes. Supports full review, re-review (verification), quick assessment, methodology focus, Socratic guided, and calibration modes. Triggers on: review paper, peer review, manuscript review, referee report, review my paper, critique paper, simulate review, editorial review, calibrate reviewer, reviewer calibration, measure reviewer accuracy, 審查論文, 論文審查, 模擬審查, 同儕審查, 幫我審這篇, 以審查人角度評估, 審查者校準, 논문 심사, 동료 심사, 모의 심사, 심사자 관점에서 평가, 심사자 보정.
日本語の概要は準備中です。原文の説明を表示しています。
Systematic strategic planning framework for philosophy and interdisciplinary academic papers targeting preprint platforms (PhilArchive, arXiv, PhilSci-Archive). Use when users want to: (1) plan a paper on a specific topic, (2) identify research gaps and assess originality, (3) develop optimized paper outlines, (4) prepare for preprint submission, or (5) understand platform requirements and writing standards. Triggered by phrases like 'plan a paper on,' 'help me design a paper about,' 'identify research gaps in,' 'is this idea original,' or when users need structured research planning. The skill guides through three phases: Platform Analysis (identifying target venue and studying sample papers), Theoretical Framework (AI-driven literature search and gap identification), and Outline Optimization (structured design with reviewer-perspective self-assessment). Each phase includes quality evaluation standards and validation checkpoints.
日本語の概要は準備中です。原文の説明を表示しています。