AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.
日本語の概要は準備中です。原文の説明を表示しています。
NVIDIA DeepStream model-import guidance for bringing vision models from Hugging Face or NVIDIA NGC into DeepStream pipelines with export, TensorRT build, and benchmark steps.
インストールする前に、エージェントに与えられる指示の中身を確認できます。
When this skill is active, read the relevant reference document before starting each phase. Do not rely on memory — reference documents contain exact script paths, bash variable conventions, log filename contracts, and critical parsing rules.
Current scope: Object detection models only. Fail fast on classification, segmentation, or other architectures detected in config.json.
| Step | Phase | Reference | What it does |
|---|---|---|---|
| 1–3 | Model Acquire | references/model-acquire.md | Browse HF/NGC, detect format, download ONNX or export SafeTensors |
| 4–5 | Engine Build | references/engine-build.md | Build dynamic TRT engine, run trtexec BS=1 and BS=MAX_BS |
| 6–7 | DS Pipeline | references/pipeline-run.md | Custom bbox parser, nvinfer config, single-stream + multi-stream benchmarks |
| 8 | Report | references/report-generation.md | 5 charts, HTML, PDF benchmark report |
Run the full pipeline autonomously without pausing for confirmation at each step.
Run before starting:
# 1. GPU and drivers
nvidia-smi
# 2. TensorRT version match (must match between builder and DS runtime)
trtexec 2>&1 | head -3
dpkg -l | grep libnvinfer-bin
# 3. Shared Python venv — create once, reuse across all models
mkdir -p build
VENV=build/.venv_optimum
if [ ! -x "$VENV/bin/python3" ]; then
python3 -m venv "$VENV"
"$VENV/bin/pip" install --upgrade pip -q
"$VENV/bin/pip" install "optimum[exporters]>=1.20,<2.0" "torch<2.12" \
transformers onnxruntime matplotlib numpy markdown -q
fi
# 4. System tools
which wkhtmltopdf || apt-get install -y wkhtmltopdf
which mediainfo || apt-get install -y mediainfo
which deepstream-app # required for KITTI dump (Step 6g) and benchmark perf-measurement (Step 7c); shipped with DeepStream SDK
# 5. Sample video — only check default path when user has not provided a custom DS_VIDEO
if [ -z "$DS_VIDEO" ]; then
[ -f /opt/nvidia/deepstream/deepstream/samples/streams/sample_720p.mp4 ] || \
echo "WARNING: sample_720p.mp4 not found. Install DeepStream samples or set DS_VIDEO=/path/to/your.mp4"
fi
Create once MODEL_NAME is known (Step 1). Never dump files flat.
models/{model_name}/
model/ <- ONNX file(s)
parser/ <- .cpp, Makefile, .so
config/ <- nvinfer config, ds-app config, labels.txt
scripts/ <- run helper scripts
benchmarks/
engines/ <- _dynamic_b{MAX_BS}.engine, timing.cache, build logs
b1/ <- trtexec BS=1 log
b{MAX_BS}/ <- trtexec BS=MAX_BS log
ds/ <- DS benchmark logs
reports/ <- benchmark_report.md, .html, .pdf, benchmark_data.json
charts/ <- chart_*.png (5 charts)
samples/ <- output .mp4 or .ogv (theoraenc fallback), test frames
kitti_output/ <- KITTI detection .txt files
mkdir -p models/$MODEL_NAME/{model,parser,config,scripts,benchmarks/engines,benchmarks/ds,reports/charts,samples/kitti_output}
{model}_dynamic_b{MAX_BS}.engine. Never bare model_dynamic.engine.batch-size and stream count are always equal.trtexec_b1.log, trtexec_b${MAX_BS}.log, ds_s${N}_run1.log, ds_s${N}_run2.log. No timestamps. Report generation reads exact paths.NvDsInferObjectDetectionInfo obj = {};. Required for DeepStream OBB support; bare obj; leaves rotation_angle uninitialized, causing tilted bounding boxes.build/.venv_optimum reused across all models. Never create per-model venvs.--noDataTransfers — GPU-only compute matches DeepStream's GPU-to-GPU data flow.skills/deepstream-import-vision-model/scripts/report/md-to-html-pdf.py. Never write a custom HTML generator or call wkhtmltopdf directly.config.json before building anything.x264enc and openh264enc are prohibited. On NVENC-unavailable systems, use theoraenc + oggmux (LGPL; ships in gst-plugins-base; output is .ogv). If theoraenc/oggmux are absent, skip video creation (DS_SINGLE_STREAM_MODE=skipped). Report which mode was used: nvv4l2h264enc / theoraenc-fallback / skipped.sample_720p.mp4 (1280×720). Never autonomously substitute sample_1080p_h264.mp4 or any other file. Only use a different video when the user explicitly provides a path (via DS_VIDEO env var or script argument).Wrap every step:
STEP_START=$(date +%s.%N)
# ... step commands ...
STEP_END=$(date +%s.%N)
STEP_DURATION=$(echo "$STEP_END - $STEP_START" | bc)
echo "[Step N] completed in ${STEP_DURATION}s"
Track PIPELINE_START (before Step 1) and PIPELINE_END (after Step 8). Report all durations in the benchmark report.
benchmark_report.md — markdown source (12 mandatory sections)benchmark_report.html — styled HTML (charts base64-inlined, no local file access)benchmark_report_{model_name}.pdf — via md-to-html-pdf.py; verify charts are embedded by counting data:image/png occurrences in the HTML output: grep -o 'data:image/png' benchmark_report.html | wc -l should equal 5Run charts and report scripts with the shared venv active: source build/.venv_optimum/bin/activate.
IMPORTANT: Read the relevant reference before starting each phase. Do NOT generate code from memory.
| Document | Use When |
|---|---|
| references/model-acquire.md | Steps 1–3: HF/NGC URL parsing, format detection, ONNX download, SafeTensors export, label extraction |
| references/engine-build.md | Steps 4–5: trtexec engine build, benchmarks, PEAK_GPU_STREAMS derivation, iterative scaling |
| references/pipeline-run.md | Steps 6–7: custom bbox parser, nvinfer config, single-stream validation, KITTI dump, multi-stream benchmark |
| references/report-generation.md | Step 8: benchmark_data.json, 5 charts, 12-section markdown report, HTML + PDF |
Located in scripts/.
| Script | Phase | Purpose |
|---|---|---|
model/hf-list-files.sh | 1–3 | List HuggingFace repo files |
model/hf-download-config.sh | 1–3 | Download config.json from HF |
model/ngc-list-files.sh | 1–3 | List NGC model files |
model/ngc-download.sh | 1–3 | Download NGC model archive |
model/safetensors-to-onnx.sh | 1–3 | Export SafeTensors → ONNX via optimum-cli |
model/inspect-onnx.py | 1–5 | Inspect ONNX input/output shapes |
model/make-static-batch-onnx.py | 4–5 | Bake batch dim into ONNX |
model/cleanup.sh | Any | Remove staging dirs, preserve shared venv |
engine/benchmark-trtexec.sh | 4–5 | Run trtexec with standard flags |
deepstream/ds-single-stream.sh | 6–7 | Single-stream visual validation (NVENC primary; theoraenc+oggmux fallback; skip if neither) |
deepstream/ds-sweep.sh | 6–7 | 2-phase batch size sweep |
deepstream/benchmark-ds.sh | 6–7 | Fixed-stream DS benchmark |
deepstream/ds-kitti-dump.sh | 6–7 | KITTI detection dump via deepstream-app |
deepstream/ds-perf-run.sh | 7 | Step 7c two-run benchmark — wraps deepstream-app with enable-perf-measurement=1, writes fixed-name log for the report parser |
deepstream/extract-frame.sh | 6–7 | Extract sample frames from output video (.mp4 NVENC path or .ogv theoraenc fallback) |
report/generate-benchmark-charts.py | 8 | Generate 5 benchmark PNG charts |
report/md-to-html-pdf.py | 8 | Markdown → styled HTML → PDF (canonical benchmark report path) |
report/md-to-pdf.sh | Any | Markdown → PDF via pandoc/pdflatex — for design docs and references only, NOT for benchmark reports (use md-to-html-pdf.py for those) |
report/report-style.css | 8 | CSS for HTML report |
report/render-mermaid-for-pdf.py | 8 | Mermaid diagram → PNG |
report/mermaid-puppeteer.json | 8 | Vetted Puppeteer config for Mermaid (sandboxed; non-root) |
report/mermaid-puppeteer-root.json | 8 | Vetted Puppeteer config for Mermaid (used when running as root) |
| Error | Fix |
|---|---|
| Tilted/diagonal bounding boxes | Parser struct not zero-initialized — use NvDsInferObjectDetectionInfo obj = {}; |
| Zero KITTI files | gie-kitti-output-dir not read by nvinfer — use ds-kitti-dump.sh (wraps deepstream-app) |
| Engine rebuilds every DS run | model-engine-file path wrong — check relative path from config/ dir |
setDimensions negative dims | Add infer-dims=3;H;W to nvinfer config for dynamic ONNX models |
--memPoolSize workspace 0.03 MiB | Use M suffix not MiB — e.g. --memPoolSize=workspace:32768M |
| ForeignNode build failure (DETR) | Use dynamo export path or run onnxsim — see references/engine-build.md |
| Zero detections | Wrong net-scale-factor — check model family table in references/pipeline-run.md |
No module named 'pyservicemaker' | Install into venv: pip install /opt/nvidia/deepstream/.../pyservicemaker*.whl |
This skill is written to stay usable across GitHub Copilot, Claude Code, and Codex.
$CODEX_HOME/skills/deepstream-import-vision-model and restart Codex after major changes.Preferred MCP Server: None required
SKILL.md, bundled references or scripts, and manual verification. Show the exact commands, evidence, and final checks you used before concluding."deepstream-import-vision-model outside its documented task boundary.Before claiming the deepstream-import-vision-model workflow succeeded:
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概要と使いどころ
AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.
日本語の概要は準備中です。原文の説明を表示しています。
Improve the clarity and voice of AI-assisted academic writing (papers, theses, rebuttals) and
日本語の概要は準備中です。原文の説明を表示しています。
12-agent academic paper writing pipeline. 11 modes (full/plan/outline/revision/revision-coach/abstract/lit-review/format-convert/citation-check/disclosure/rebuttal-audit). 6 paper types, 5 citation formats, bilingual abstracts, LaTeX/DOCX-via-Pandoc/PDF output. Style Calibration + Writing Quality Check + Anti-Patterns with IRON RULE markers. Triggers: write paper, academic paper, guide my paper, parse reviews, audit my rebuttal, check my response draft, AI disclosure, 寫論文, 學術論文, 引導我寫論文, 審查意見, 評估回覆, 논문 작성, 초록 작성, 논문 수정, 논문 계획을 도와줘, 심사 의견 반영, 답변서 점검, AI 사용 고지.
日本語の概要は準備中です。原文の説明を表示しています。
Systematic writing framework for philosophy and interdisciplinary academic papers from optimized outline to submission-ready manuscript. Use when users want to: (1) write a paper from a detailed outline, (2) ensure quality control during writing, (3) maintain consistency across chapters, (4) prepare a submission-ready manuscript, or (5) systematically execute a planned paper. Triggered by phrases like 'write the paper from this outline,' 'compose the full manuscript,' 'execute the outline,' or when users have completed strategic planning (academic-paper-strategist skill) and are ready to write. Takes optimized outline as input; outputs complete manuscript with iterative quality checks.
日本語の概要は準備中です。原文の説明を表示しています。
Multi-perspective academic paper review with dynamic reviewer personas. Runs a 5-seat, role-separated review panel (Journal-Fit Reviewer + 3 peer-review roles + Devil's Advocate) with field-specific expertise; role separation is not a claim of independent error processes. Supports full review, re-review (verification), quick assessment, methodology focus, Socratic guided, and calibration modes. Triggers on: review paper, peer review, manuscript review, referee report, review my paper, critique paper, simulate review, editorial review, calibrate reviewer, reviewer calibration, measure reviewer accuracy, 審查論文, 論文審查, 模擬審查, 同儕審查, 幫我審這篇, 以審查人角度評估, 審查者校準, 논문 심사, 동료 심사, 모의 심사, 심사자 관점에서 평가, 심사자 보정.
日本語の概要は準備中です。原文の説明を表示しています。
Systematic strategic planning framework for philosophy and interdisciplinary academic papers targeting preprint platforms (PhilArchive, arXiv, PhilSci-Archive). Use when users want to: (1) plan a paper on a specific topic, (2) identify research gaps and assess originality, (3) develop optimized paper outlines, (4) prepare for preprint submission, or (5) understand platform requirements and writing standards. Triggered by phrases like 'plan a paper on,' 'help me design a paper about,' 'identify research gaps in,' 'is this idea original,' or when users need structured research planning. The skill guides through three phases: Platform Analysis (identifying target venue and studying sample papers), Theoretical Framework (AI-driven literature search and gap identification), and Outline Optimization (structured design with reviewer-perspective self-assessment). Each phase includes quality evaluation standards and validation checkpoints.
日本語の概要は準備中です。原文の説明を表示しています。