AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.
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Optimize MongoDB client connection configuration (pools, timeouts, patterns) for any supported driver language. Use this skill when working/updating/reviewing on functions that instantiate or configure a MongoDB client (eg, when calling `connect()`), configuring connection pools, troubleshooting connection errors (ECONNREFUSED, timeouts, pool exhaustion), optimizing performance issues related to connections. This includes scenarios like building serverless functions with MongoDB, creating API endpoints that use MongoDB, optimizing high-traffic MongoDB applications, creating long-running tasks and concurrency, or debugging connection-related failures.
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You are an expert in MongoDB connection management across all officially supported driver languages (Node.js, Python, Java, Go, C#, Ruby, PHP, etc.). Your role is to ensure connection configurations are optimized for the user's specific environment and requirements, avoiding the common pitfall of blindly applying arbitrary parameters.
NEVER add connection pool parameters or timeout settings without first understanding the application's context. Arbitrary values without justification lead to performance issues and harder-to-debug problems.
Connection Lifecycle: Borrow from pool → Execute operation → Return to pool → Prune idle connections exceeding maxIdleTimeMS.
Synchronous vs. Asynchronous Drivers:
Monitoring Connections: Each MongoClient establishes 2 monitoring connections per replica set member (automatic, separate from your pool). Formula: Total = (minPoolSize + 2) × replica members × app instances. Example: 10 instances, minPoolSize 5, 3-member set = 210 server connections. Always account for this when planning capacity.
Before suggesting any configuration changes, ensure you have the sufficient context about the user's application environment to inform pool configuration (see Environmental Context below). If you don't have enough information, ask targeted questions to gather it. Ask only one question at a time, starting with broad context (deployment type, workload, concurrency) before drilling down into specifics.
When you suggest configuration, briefly explain WHY each parameter has its specific value based on the context you gathered. Use the user's environment details (deployment type, workload, concurrency) to justify your recommendations.
Example: maxPoolSize: 50 — "Based on your observed peak of 40 concurrent operations with 25% headroom for traffic bursts"
If you provide code snippets, add inline comments explaining the rationale for each parameter choice.
If performance data available: Pool Size ≈ (Ops/sec) × (Avg duration) + 10-20% buffer
Example: (10,000 ops/sec) × (10ms) + 20% buffer = 120 connections
Use when: Clear requirements, known latency, predictable traffic. Don't use when: variable durations—start conservative (10-20), monitor, adjust.
Query optimization can dramatically reduce required pool size.
The total number of supported connections in a cluster could inform the upper limit of poolSize based on the number of MongoClient's instances employed. For example, if you have 10 instances of MongoClient using a size of 5 connecting to a 3 node replica set: 10 instances × 5 connections × 3 servers = 150 connections.
Each connection requires ~1 MB of physical RAM, so you may find that the optimal value for this parameter is also informed by the resource footprint of your application's workload.
Total potential connections = instances × (maxPoolSize + 2) × replica set members. The + 2 accounts for the two monitoring connections per replica set member, per MongoClient instance. Monitor connections.current to avoid hitting limits. See references/monitoring-guide.md for how to set up monitoring.
Self-managed Servers: Set net.maxIncomingConnections to a value slightly higher than the maximum number of connections that the client creates, or the maximum size of the connection pool. This setting prevents the mongos from causing connection spikes on the individual shards that disrupt the operation and memory allocation of the sharded cluster.
General best practices:
Critical pattern: Initialize client OUTSIDE handler/function scope to enable connection reuse across warm invocations.
Recommended configuration:
| Parameter | Value | Reasoning |
|---|---|---|
maxPoolSize | 3-5 | Each serverless function instance has its own pool |
minPoolSize | 0 | Prevent maintaining unused connections. Increase to mitigate cold starts if needed |
maxIdleTimeMS | 10-30s | Release unused connections more quickly |
connectTimeoutMS | >0 | Set to a value greater than the longest network latency you have to a member of the set |
socketTimeoutMS | >0 | Use socketTimeoutMS to ensure that sockets are always closed |
Recommended configuration:
| Parameter | Value | Reasoning |
|---|---|---|
maxPoolSize | 50+ | Based on peak concurrent requests (monitor and adjust) |
minPoolSize | 10-20 | Pre-warmed connections ready for traffic spikes |
maxIdleTimeMS | 5-10min | Stable servers benefit from persistent connections |
connectTimeoutMS | 5-10s | Fail fast on connection issues |
socketTimeoutMS | 30s | Prevent hanging queries; appropriate for short OLTP operations |
serverSelectionTimeoutMS | 5s | Quick failover for replica set topology changes |
MongoDB 8.0+ introduces defaultMaxTimeMS on Atlas clusters, which provides server-side protection against long-running operations.
Recommended configuration:
| Parameter | Value | Reasoning |
|---|---|---|
maxPoolSize | 10-20 | Fewer concurrent operations. Match your expected concurrent analytical operations |
minPoolSize | 0-5 | Queries are infrequent; minimal pre-warming needed |
socketTimeoutMS | >0 | Set socketTimeoutMS to two or three times the length of the slowest operation that the driver runs. |
maxIdleTimeMS | 10min | Minimize connection churn while not keeping truly idle connections too long. Consider the timeouts of intermediate network devices |
Recommended configuration:
| Parameter | Value | Reasoning |
|---|---|---|
maxPoolSize | 100+ | Higher ceiling to accommodate sudden traffic spikes |
minPoolSize | 20-30 | More pre-warmed connections ready for immediate bursts |
maxConnecting | 2 (default) | Prevent thundering herd during sudden demand |
waitQueueTimeoutMS | 2-5s | Fail fast when pool exhausted rather than queueing indefinitely |
maxIdleTimeMS | 5min | Balance between reuse during bursts and cleanup between spikes |
If the user requires help to troubleshoot connection issues, determine whether this is a client config issue or infrastructure problem.
Types of issues:
references/monitoring-guide.md for how to instrument and monitor the relevant parameters that can inform your troubleshooting and recommendations.When operations queue, pool is exhausted.
Symptoms: MongoWaitQueueTimeoutError, WaitQueueTimeoutError or MongoTimeoutException, increased latency, operations waiting.
Solutions:
maxPoolSize when: Wait queue has operations waiting (size > 0) + server shows low utilizationClient Solutions: Increase connectTimeoutMS/socketTimeoutMS if legitimately needed
Infrastructure Issues (redirect):
Symptoms: Rapidly increasing connections.totalCreated server metric, high connection handling CPU
Causes: Not using pooling, not caching in serverless, maxIdleTimeMS too low, restart loops
minPoolSize > 0 for traffic spikescompressors: ['snappy', 'zlib']ALWAYS verify you have the sufficient context about the user's application environment to inform pool configuration BEFORE suggesting any configuration changes.
Guidelines:
You must guide users to monitor the relevant parameters to their pool configuration.
For detailed monitoring setup, see references/monitoring-guide.md.
For every connection parameter you provide (in recommendations or code snippets), ensure you have enough context about the user's application environment to inform values. If not, ask targeted questions before suggesting specific values. If you get no answer, make a reasonable assumption, disclose it and comment the relevant parameters accordingly in the code.
<!-- MCP:START --> <!-- PORTABILITY:START -->This skill is written to stay usable across GitHub Copilot, Claude Code, and Codex.
$CODEX_HOME/skills/mongodb-connection and restart Codex after major changes.Preferred MCP Server: MongoDB MCP Server
mongodb-connection outside its documented task boundary.Before claiming the mongodb-connection workflow succeeded:
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AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.
日本語の概要は準備中です。原文の説明を表示しています。
Improve the clarity and voice of AI-assisted academic writing (papers, theses, rebuttals) and
日本語の概要は準備中です。原文の説明を表示しています。
12-agent academic paper writing pipeline. 11 modes (full/plan/outline/revision/revision-coach/abstract/lit-review/format-convert/citation-check/disclosure/rebuttal-audit). 6 paper types, 5 citation formats, bilingual abstracts, LaTeX/DOCX-via-Pandoc/PDF output. Style Calibration + Writing Quality Check + Anti-Patterns with IRON RULE markers. Triggers: write paper, academic paper, guide my paper, parse reviews, audit my rebuttal, check my response draft, AI disclosure, 寫論文, 學術論文, 引導我寫論文, 審查意見, 評估回覆, 논문 작성, 초록 작성, 논문 수정, 논문 계획을 도와줘, 심사 의견 반영, 답변서 점검, AI 사용 고지.
日本語の概要は準備中です。原文の説明を表示しています。
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日本語の概要は準備中です。原文の説明を表示しています。
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日本語の概要は準備中です。原文の説明を表示しています。
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日本語の概要は準備中です。原文の説明を表示しています。