AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.
日本語の概要は準備中です。原文の説明を表示しています。
Guides MongoDB users through implementing and optimizing Atlas Search (full-text), Vector Search (semantic), and Hybrid Search solutions. Use this skill when users need to build search functionality for text-based queries (autocomplete, fuzzy matching, faceted search), semantic similarity (embeddings, RAG applications), or combined approaches. Also use when users need text containment, substring matching ('contains', 'includes', 'appears in'), case-insensitive or multi-field text search, or filtering across many fields with variable combinations. Provides workflows for selecting the right search type, creating indexes, constructing queries, and optimizing performance using the MongoDB MCP server.
インストールする前に、エージェントに与えられる指示の中身を確認できます。
You are helping MongoDB users implement, optimize, and troubleshoot Atlas Search (lexical), Vector Search (semantic), and Hybrid Search (combined) solutions. Your goal is to understand their use case, recommend the appropriate search approach, and help them build effective indexes and queries.
create, update, or delete operation tools, you are in read-only mode. Provide the complete index configuration JSON so the user can create it themselves, including via the Atlas UI.Check the environment:
list-databases and list-collections to understand available datacollection-schema to inspect field structurecollection-indexes to see existing indexesatlas-inspect-cluster to determine the cluster's MongoDB versionUnderstand the use case: If the user's request is vague:
Common questions to ask:
Atlas Search (Lexical/Full-Text): Use when users need:
Vector Search (Semantic): Use when users need:
Hybrid Search: Use when users need:
$rankFusion (rank-based) or $scoreFusion (score-based) to merge pipelinesIf the search type is Hybrid using $rankFusion or $scoreFusion, verify the cluster version before proceeding:
$rankFusion requires MongoDB 8.0+$scoreFusion requires MongoDB 8.2+If the version requirement is not met, do not proceed — inform the user the feature is unavailable and suggest upgrading. Do not consult references/hybrid-search.md.
If the search type is Lexical, Vector, or the lexical prefilter pattern (vectorSearch operator inside $search), proceed to the next step.
Always consult the appropriate reference file(s) before recommending indexes or queries:
references/lexical-search-indexing.md (index) and references/lexical-search-querying.md (query)references/vector-search.mdreferences/hybrid-search.md (and the lexical/vector files for the individual pipeline stages within it)Creating indexes:
create-index tool after approvalRunning queries:
aggregate toolRefining existing queries:
aggregate to validate the resultsThis skill is written to stay usable across GitHub Copilot, Claude Code, and Codex.
$CODEX_HOME/skills/mongodb-search-and-ai and restart Codex after major changes.Preferred MCP Server: MongoDB MCP Server
NEVER recommend $regex or $text for search use cases:
If a user asks for regex/text for a search use case, explain why Atlas Search is more appropriate and show the equivalent pattern.
User mentions fields you can't find:
collection-schema to inspect available fieldsRequired field doesn't exist:
Query fails or index missing:
collection-indexes to verify index existsMultiple collections are relevant:
mongodb-search-and-ai outside its documented task boundary.Before claiming the mongodb-search-and-ai workflow succeeded:
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概要と使いどころ
AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.
日本語の概要は準備中です。原文の説明を表示しています。
Improve the clarity and voice of AI-assisted academic writing (papers, theses, rebuttals) and
日本語の概要は準備中です。原文の説明を表示しています。
12-agent academic paper writing pipeline. 11 modes (full/plan/outline/revision/revision-coach/abstract/lit-review/format-convert/citation-check/disclosure/rebuttal-audit). 6 paper types, 5 citation formats, bilingual abstracts, LaTeX/DOCX-via-Pandoc/PDF output. Style Calibration + Writing Quality Check + Anti-Patterns with IRON RULE markers. Triggers: write paper, academic paper, guide my paper, parse reviews, audit my rebuttal, check my response draft, AI disclosure, 寫論文, 學術論文, 引導我寫論文, 審查意見, 評估回覆, 논문 작성, 초록 작성, 논문 수정, 논문 계획을 도와줘, 심사 의견 반영, 답변서 점검, AI 사용 고지.
日本語の概要は準備中です。原文の説明を表示しています。
Systematic writing framework for philosophy and interdisciplinary academic papers from optimized outline to submission-ready manuscript. Use when users want to: (1) write a paper from a detailed outline, (2) ensure quality control during writing, (3) maintain consistency across chapters, (4) prepare a submission-ready manuscript, or (5) systematically execute a planned paper. Triggered by phrases like 'write the paper from this outline,' 'compose the full manuscript,' 'execute the outline,' or when users have completed strategic planning (academic-paper-strategist skill) and are ready to write. Takes optimized outline as input; outputs complete manuscript with iterative quality checks.
日本語の概要は準備中です。原文の説明を表示しています。
Multi-perspective academic paper review with dynamic reviewer personas. Runs a 5-seat, role-separated review panel (Journal-Fit Reviewer + 3 peer-review roles + Devil's Advocate) with field-specific expertise; role separation is not a claim of independent error processes. Supports full review, re-review (verification), quick assessment, methodology focus, Socratic guided, and calibration modes. Triggers on: review paper, peer review, manuscript review, referee report, review my paper, critique paper, simulate review, editorial review, calibrate reviewer, reviewer calibration, measure reviewer accuracy, 審查論文, 論文審查, 模擬審查, 同儕審查, 幫我審這篇, 以審查人角度評估, 審查者校準, 논문 심사, 동료 심사, 모의 심사, 심사자 관점에서 평가, 심사자 보정.
日本語の概要は準備中です。原文の説明を表示しています。
Systematic strategic planning framework for philosophy and interdisciplinary academic papers targeting preprint platforms (PhilArchive, arXiv, PhilSci-Archive). Use when users want to: (1) plan a paper on a specific topic, (2) identify research gaps and assess originality, (3) develop optimized paper outlines, (4) prepare for preprint submission, or (5) understand platform requirements and writing standards. Triggered by phrases like 'plan a paper on,' 'help me design a paper about,' 'identify research gaps in,' 'is this idea original,' or when users need structured research planning. The skill guides through three phases: Platform Analysis (identifying target venue and studying sample papers), Theoretical Framework (AI-driven literature search and gap identification), and Outline Optimization (structured design with reviewer-perspective self-assessment). Each phase includes quality evaluation standards and validation checkpoints.
日本語の概要は準備中です。原文の説明を表示しています。