Start-of-session report on where a repository stands. Reads the project's own handoff and log files, checks live git state, and reports objective, verified baseline, open tasks, blockers, and next actions. Use when resuming work. Twin of finished.
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OCR scanned or image-only corpora with vision-language models in four phases: `triage` inventories the scans, identifies script and language, and shortlists models by script, hardware, and data constraints; `evaluate` picks a system by measured CER/WER against ground truth, using born-digital twins, a second reader, and decision rules set in advance; `run` builds the production pipeline; and `clean` removes model artifacts, audits what every cleaning rule deletes, corrects with rule-based and LLM passes, and records provenance. Born-digital documents with a text layer go to $doc-to-markdown; runs on Leiden's ALICE cluster add $vlm-ocr-alice.
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Scaffold or audit a research-project repository organized around its source library (PDFs, Markdown conversions, bibliography, intake pipeline) plus the analysis, manuscript, and review folders it needs. Use when starting or auditing a research repo. Not for one-PDF intake or publication replication packages.
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Organize an author's response to peer review: extract every referee point, order the revision by dependency, flag possible pushbacks, and build the response-letter skeleton the author fills in. Use for revise-and-resubmit planning, response letters, or checking every point was answered.
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Consults Fable as an independent, read-only reviewer at an effort the caller matches to the question. The calling session (usually Opus, or Haiku) holds the task and escalates one decision point. Use before committing to an interpretation or a substantial piece of writing or analysis, when stuck or not converging, when changing approach, or as a final check on a finished task. Fallback for when the native advisor tool is unavailable. Not for a session already running Fable.
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Design and format publication-quality figures. Use for chart choice, color, scales, legends, captions, accessibility, and reproducible figure workflows.
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Orchestrate complex work from an active gpt-6-astra or gpt-6.1-sol Codex session. The detected lead owns decomposition, integration, and verification; Astra keeps the hardest reasoning in the lead, while Sol escalates unusually difficult units to Astra. Both route bounded work to Sol at medium effort, mechanical work to Luna, and can use a cross-vendor Claude peer. Not for routine single-context work. Use when the user explicitly asks to orchestrate, delegate, fan out, parallelize, assign subagents, obtain independent checks, or have Codex act as tech lead.
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End-stage QA for a finished figure and table set (callouts, numbering, cross-references, text-to-exhibit consistency, captions and notes, accessibility, SI and replication linkage). Use when preparing a submission.
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Reviews a whole deliverable against its manifest without rewriting it — deterministic gate, per-section finders, a whole-work pass, and adjudicated findings.json and report.md with honest coverage. Use before shipping a deliverable or for the night shift.
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Turns dictated captures in a deliverable's inbox/ into a proposed planning-wiki diff, classifying and tracing each statement; decisions need the author's assent. Use to intake notes or process the inbox.
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House rules and craft for LaTeX Beamer decks (storyboarding, slide prose, frame budgets, layout, XeLaTeX and Korean fonts, color, figures, Overleaf hygiene, build QA). Use to write, edit, review, or build a Beamer deck.
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Audit a manuscript's citations for fabricated sources, DOIs that resolve to the wrong work, in-text and reference-list mismatches, style, and claim support, verified against Crossref and OpenAlex. Use to check citations, references, a .bib file, or DOIs.
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Turns a raw Qualtrics conjoint export into analysis-ready long-format data: implementation identification, reshaping, choice-profile alignment, reference categories, and pilot exclusion. Use when a conjoint CSV needs cleaning, reshaping, or debugging before AMCE estimation.
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Designs multi-country survey experiments: case selection, localization and TRAPD translation, stimulus calibration, per-country power, and pooled versus per-country analysis with measurement-equivalence checks. Use when fielding the same experiment in several countries.
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Read or convert documents (PDF, Office, OpenDocument, RTF, EPUB, CSV) in a research workflow: read directly or convert, pick the converter from document structure, and decide whether the Markdown is tracked or scratch. Use when a document must be read, quoted, summarized, searched, extracted, or added to a source library; scans go to $vlm-ocr.
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Fact-check manuscript claims against their cited sources in a per-source Markdown knowledge base. Use to audit claim support, overclaiming, direction, scope, and misattribution after source intake is complete.
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Draft a referee report on someone else's manuscript for a journal editor, using five adversarial finders, a Blue Team error filter, a Chief Reviewer synthesis, and a Tone Guard legal pass. Use when the user has been asked to referee a manuscript; self-audits go to paper-review-lite or presubmit, author responses to referee-response.
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