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Start, structure, and grow a persistent research wiki indexed in pro-workflow's SQLite knowledge base. Each wiki is a folder of markdown pages with provenance, plus a shadow FTS5 index so any session can recall it. Use when the user says "start a wiki", "add to wiki", "compile a page", "wiki on X", or wants a long-lived knowledge base on a topic, paper, product, person, project, or codebase.
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Query pro-workflow wikis via SQLite FTS5 BM25 retrieval. Returns top-K passages with citations. Use when answering a question that any of the user's wikis already covers, when the user says "what does the wiki say about X", "ask wiki", "search wikis", or before drafting a new wiki page (to avoid duplication).
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Export and convert Apple Notes to Markdown, JSON, HTML, and SQLite. Use when backing up notes, exporting to other apps, converting HTML to Markdown, or building searchable note archives from Apple Notes. Trigger: "export apple notes", "apple notes to markdown", "backup apple notes", "apple notes to JSON", "convert apple notes".
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Run a Google Alerts-style keyword coverage tracker. Uses news-search for recent keyword queries, lets the LLM dedupe and classify real features versus junk, stores decisions in SQLite, and alerts only on new real coverage.
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Room/SQLite, DataStore and repository traps: migrations, NOT IN with NULLs, LIKE escaping, delete order, local-time bucketing, imports, caching, paging. Use before writing a query or migration, or when data comes back wrong.
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Parses, queries, converts, and extracts from GTF and GFF3 gene-model annotation files - walking the gene/transcript/exon/CDS hierarchy with gffutils (queryable SQLite DB), converting formats and extracting transcript/CDS/protein FASTA with gffread, slurping to dataframes with gtfparse/pyranges, and sanitizing malformed files with AGAT. Covers the 1-based-inclusive vs 0-based BED coordinate conversion (start-1 only), deriving implicit features (introns/UTRs/TSS), phase-not-frame, the stop-codon-in-or-out-of-CDS convention, and the chr1-vs-1 seqid and gene-ID-version mismatches that silently produce all-zero count matrices and dropped joins. Use when extracting features or sequences from an annotation, converting GTF<->GFF3 or GTF->BED, traversing the gene tree, or diagnosing a coordinate/provenance mismatch upstream of counting or DE.
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Use when working with ANY data persistence, database, storage, CloudKit, migration, or serialization in an Apple app. Covers SwiftData, Core Data, GRDB, SQLite, Realm, CloudKit sync, file storage, Codable, migrations.
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Use when the user mentions database schema review, migration safety, GRDB migration audit, or SQLite schema checking.
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Reads from, writes to, and manages relational databases using MATLAB Database Toolbox. Use when connecting to databases, reading data with sqlread or fetch, filtering with rowfilter, writing with sqlwrite, updating with sqlupdate, executing SQL statements, managing transactions with commit and rollback, mapping MATLAB classes to tables with ORM (Mappable, ormread, ormwrite, ormupdate), or performing any database operation from MATLAB. Triggers on: database, SQL, sqlread, sqlwrite, sqlupdate, fetch, execute, rowfilter, RowFilter, ORM, Mappable, ormread, ormwrite, ormupdate, orm2sql, transaction, commit, rollback, Database Toolbox, PostgreSQL, MySQL, SQLite, SQL Server, Oracle, database connection, database table, query database, insert data, update rows, delete rows, stored procedure, prepared statement, odbc, databaseConnectionOptions, datasource, data source, DSN, connection string, multithreaded, parallel.
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Design relational schemas from requirements with normalization, migrations, ERDs, RLS policies, and indexes for PostgreSQL, MySQL, and SQLite. Use when designing new features, reviewing schemas, or adding multi-tenancy.
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Use when the user says brain, project knowledge, what do we know about, open tasks, or recent decisions, or runs /brain or /brain-update. SQLite project_brain.db tracker for entities, relationships, tasks, threads, decisions, events.
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Provides utilities for identifying drug-target interactions for sets of small molecule or gene/protein identifiers. The required drug-target interaction information is obained from a local SQLite instance of the ChEMBL database. ChEMBL has been chosen for this purpose, because it provides one of the most comprehensive and best annotatated knowledge resources for drug-target information available in the public domain.
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覆盖批量任务完整生命周期：参数叉乘创建、猴子补丁钩子追踪队列提交与执行、状态聚合状态机、队列中断取消、文件清理删除。 导航时机：理解批量任务从创建到完成的全流程、调试端到端任务生命周期问题、修改任务状态转换、排查任务卡住、新增生命周期阶段或状态。 排除：结果处理与输出媒体处理（见 ../result-processing/）、资源上传管理、前端UI逻辑。 关键词: 批量任务生命周期, createBatchTask, cancelTask, deleteTask, post_prompt, task_start, task_done, BatchToolsHandler, SubTaskStatus, CommonTaskStatus, prompt_queue, 猴子补丁, 参数叉乘, 状态聚合, 队列执行, 文件清理, SQLite WAL。
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微信收藏可视化：从加密的微信本地数据库端到端解密、解析，生成交互式 HTML 可视化报告。 触发词：/wx-favorites-report、微信收藏可视化、收藏报告、收藏分析 支持输入：加密/解密后的 Favorite.db（SQLite）或 CSV/JSON 导出文件
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Write Pest feature tests with RefreshDatabase, mock external services, and create test data with Eloquent Factories in Laravel. Use when adding HTTP tests, configuring SQLite in-memory test database, or mocking payment services.
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Relational database implementation across Python, Rust, Go, and TypeScript. Use when building CRUD applications, transactional systems, or structured data storage. Covers PostgreSQL (primary), MySQL, SQLite, ORMs (SQLAlchemy, Prisma, SeaORM, GORM), query builders (Drizzle, sqlc, SQLx), migrations, connection pooling, and serverless databases (Neon, PlanetScale, Turso).
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Provides comprehensive Drizzle ORM patterns for schema definition, CRUD operations, relations, queries, transactions, and migrations. Proactively use for any Drizzle ORM development including defining database schemas, writing type-safe queries, implementing relations, managing transactions, and setting up migrations with Drizzle Kit. Supports PostgreSQL, MySQL, SQLite, MSSQL, and CockroachDB.
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Designs relational and document database schemas from requirements or an existing app - tables and collections, keys, relationships, constraints, indexes driven by real query patterns, ERDs, and reversible migration scripts - with PostgreSQL (including Supabase) as the default and MySQL, SQLite, and MongoDB supported. Use when the user wants to model data for a new app or feature, review or fix an existing schema, choose keys or indexes, plan multi-tenancy, normalize or denormalize, or write CREATE TABLE statements or migrations, even if they just describe their app and ask "how should I store this". For moving data between database providers, use database-migrator.
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Continue the current local Codex conversation and coding task in an AgentKit Studio cloud Codex Sandbox using a Studio URL and short one-time pairing code. Use when the user asks to hand off, migrate, or continue a local repository in Studio, especially when a prompt contains a Studio address and pairing code. Export the complete user-visible user and assistant message history from every prior turn, including interrupted turns and progress commentary, create a temporary Studio Sandbox, restore tracked and non-ignored working-tree files plus Git metadata, inject that visible history into the cloud Thread, transfer GitHub CLI authentication separately when needed, and send one final continuation message; never copy system or developer prompts, reasoning, tool logs, SQLite state, global configuration, local skills, or SSH private keys.
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Builds or updates the code knowledge graph via tree-sitter AST and SQLite. Use when setting up the graph before search or blast-radius analysis.
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Create and review Cloudflare Durable Objects. Use when building stateful coordination (chat rooms, multiplayer games, booking systems), implementing RPC methods, SQLite storage, alarms, WebSockets, or reviewing DO code for best practices. Covers Workers integration, wrangler config, and testing. Biases towards retrieval from Cloudflare docs over pre-trained knowledge.
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Cloudflare D1 serverless SQLite on edge. Use for databases, migrations, bindings, or encountering D1_ERROR, statement too long, too many requests queued errors.
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Use when integrating Drizzle ORM with Bun's SQLite driver for type-safe schema definitions and migrations.
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Manages the Morphir knowledge base under kb/ — OKF bundles and concept documents. Use when adding content to a bundle, creating a new bundle, checking the knowledge base for conformance or provenance drift, building or querying its SQLite index, managing intent through its lifecycle, recording or reading architectural decisions as Decision Records, or navigating, searching and listing its bundles, concepts and links.
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