Prepare, launch, monitor, and summarize the real RFdiffusion to ProteinMPNN to Protenix antibody pipeline on a local or remote ScienceDiscovery Runner with sandboxed Ascend NPUs.
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Use when the user wants to improve something by repeated search rather than one edit — a program, a prompt, a document, a pipeline, a configuration, an experimental protocol. Triggers on `/evolve-design`, "把这个做得更好", "搜索一个更好的方案", or any request to optimise against a measurable target. Runs a short checkpointed design conversation, verifies the scoring can rank candidates, then calls `create_evolve_run`. Not for a single fix, a refactor, or a question about existing code.
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实测评分 未实测
查看安装方法安装前可以查看交给 AI 代理的指令内容。
A search rewrites a candidate dozens of times and keeps what scores higher. The candidate can be anything text-shaped: a function, a whole program, a prompt, a report section, a config file, a protocol. It succeeds or fails on whether the scoring can tell a good candidate from a bad one — scoring that cannot shows up as a flat run, not as an error.
Algorithm first. The user's /evolve-design command may carry --algorithm puct or
--algorithm openevolve; if unset, ask. PUCT ranks candidates over a tree, OpenEvolve over
MAP-Elites islands. The four steps and the four scoring modes are identical for both, so design
the scorecard, the split and the starting point the same way and only set algorithm in
create_evolve_run.
Four checkpoints. Do the work for a step, show the result, wait for the user, then go on. A checkpoint is a glance, not a form: a few lines they can wave through, with a recommended default for every open question so "looks right" is always a valid answer. Do the work between checkpoints yourself; do not narrate it.
If the user says "you decide" or "just go", state your choices for the remaining steps in one message and run them without stopping. If they correct something, apply it and re-show that step only.
Do not design the whole thing in one thinking pass. Ask, write files, run them, then decide the numbers — a turn spent planning it all produces no candidate and no result.
Read what is free first: this conversation, the workspace, science memory. Settle three things:
The measurable criterion. "More accurate" — which error measure? "Less AI-sounding" — which specific tic? It must separate the complaint from its opposite: "well-structured and readable" fails, because it is true of any document.
What must not change. Inputs unavailable when the thing actually runs, files that define the score, hard limits (budget, runtime, memory, safety).
The starting point. Use what is in the workspace. Otherwise write the simplest thing that already does the job badly — a dozen lines, no tuning, no edge cases. A strong seed spends the search space before the search begins.
But simplest of the right kind: the seed must contain the mechanism the search is meant to improve, in its feeblest form. A seed with no mechanism makes every candidate invent one from nothing, and from-scratch code fails far more often than an edit. Measured: a compression task seeded with identity encoding spent ten expansions on whole compressors written from scratch, seven of which did not run; seed the RLE, not the identity function. A good seed is necessary, not sufficient — candidates may still replace the whole mechanism.
Do not steer by naming the mechanism. "Add a longer match window to the existing RLE" takes the search's own job away and leaves the run tuning your algorithm. The task says what "better" is measured as, never which approach reaches it. A run that finds nothing above the seed is a result. What is yours to reconsider is the scoring — do the cases reward what you care about, is the corpus wide enough to separate approaches — not the approach you would like.
Checkpoint 1. Say back, in a few lines: what will be measured, what is frozen, and what the starting point is. Ask only for what you genuinely could not infer — all of it at once.
Write the starting point and the evaluator, then run the evaluator once, against the starting
point, with run_shell (for example python evaluator.py, selecting a Python-capable
environment_id). You are checking that it executes and emits a number — a typo, a missing
import, a result file never written. That is the whole of the local check.
Do not score a broken copy locally. The server's discrimination probe does exactly that, on
the real shards in the real sandbox, and hands you both numbers when the run starts. Your
run_shell environment and the candidate sandbox are different places with different shard
indices, so the numbers can legitimately differ (one session saw local 0.3853, server 0.0000, and
spent the turn reconciling them). When they disagree, the server's is true — do not
investigate the gap. A probe refusal costs four sandbox evaluations and no model calls, so it is
cheap to be wrong here.
Aim for a starting point in 0.3–0.7: 0 is a floor, solved is a ceiling. The probe reports where it actually landed.
The evaluator must survive bad candidates — including at import. Most candidates are broken,
and the probe deliberately scores a broken one. Guard import candidate itself (a hollowed-out
module can leave a name as None or raise before any per-case try/except can reach it) and
each individual call. On an import failure score every shard worst: 0.0 on a larger-is-better
scale, not 1.0 — an inverted guard made one live run's winner a module that does not load, at a
perfect 1.0000. It is the evaluator that must be robust, never the candidate. If the script
itself crashes, nothing runs and the whole run is refused.
You are checking the ruler, not looking for the answer. Do not go looking for a candidate that beats the starting point — that is the search's entire job, done by hand at the cost of the turn, and succeeding is worse than failing: you then throw the answer away or seed it, and a strong seed spends the search space. A starting point no obvious variation beats is a good one.
Checkpoint 2. Show one number — what the starting point scored — plus whether the evaluator ran, and one sentence on what the scoring rewards. This is where a criterion that measures the wrong thing gets caught, so make it easy to disagree: name what a candidate could do to score higher, and let the user say whether that is what they want.
If the total will not fit, shrink each unit — do not cut the gate, which is the only number the search steers by.
expansions must be at least 4 × workers, or the first sweep forks only the root and the tree
is flat. By search space: a known defect 4–6; swapping approach or restructuring 12–20; writing
something from scratch 20+. Thinking off unless asked — with it on, one whole-candidate
rewrite can exceed the proxy limit and return nothing.
search — leave it out unless this task argues against the defaults. They are upstream's and
usually right; the parameter descriptions on create_evolve_run carry the ranges and what each
does. Set one only for a reason you can give in a line:
cPuct — lower when the gate is large enough to trust and the budget is small; higher when the
score is noisy or coarse or candidates keep tying. A coarse score is a scoring problem first:
widen the gate before reaching for it.priorExponent — when the failure you expect is a whole-mechanism rewrite (five of eighteen
compression candidates replaced a working RLE+Huffman with a from-scratch arithmetic coder, and
each scored 0). It cannot move the reported score; that comes from held-out shards.Checkpoint 3. Show the shape in a few lines: what one unit is, how much is held out, how many expansions with how many workers, and roughly what that costs in time and model calls. Mention
searchonly if you set it, in one line saying why; otherwise leave it out. This is the last point before real money is spent — say so plainly, and default to the smaller option when unsure.
Call create_evolve_run. Set algorithm to what the user chose. howScored is one sentence
for the user: what it measures, how much is held out. risks: at most two, only ones that change
a decision; empty is fine.
Checkpoint 4. Report what came back — the probe's two numbers and what the search will do — and then end the turn. Do not wait for it, do not call
get_evolve_runto check on it, do not loop. The search runs for minutes to hours; its card streams live progress, and sitting on the turn shows the user nothing they cannot already see and burns the run's own budget.get_evolve_runis for later, when the user asks how it went — then report the actual numbers, never an improvement you have not read.
A refusal is design feedback, not an error. "Cannot discriminate" means the scoring needs harder cases or a more mechanical rubric; "no slope" means the starting point is too strong. Fix it and call again — do not hand the user the server's refusal text as a work order.
Take the first that fits. custom_script is the fallback, not the default: you write and
maintain the measuring apparatus yourself, so every mistake in it is yours. Judge by what the task
is, not by what is in the workspace right now — "there is no table yet" is not a reason to skip
dataset_metric when the task is to predict a column; write the table, then use it.
dataset_metric. Deterministic and
cheapest, and the framework owns the split so you cannot get it wrong. Metrics: accuracy / mae /
r2 / rmse / seconds.test_gate. Take it whenever the user says "write
tests", "make these cases pass", or describes behaviour case by case. The failure text is the
learning signal, and frozenGlobs must include the test paths, or the shortest way to a
higher score is to weaken the tests. Shards ≤ half the case count.custom_script, which you write: simulations, optimisation heuristics,
anything whose quality is a computation with no natural table and no test suite. Read
references/custom-script.md before writing the evaluator — it holds the contract, how it
runs, and the error rule the probe enforces (a crash must say where, not just what).llm_judge. For prose and explanations, anything whose
quality is a reading. The most gameable and the only non-deterministic mode; ask once whether it
could be a custom_script instead.Score on a gradient, not a cliff. For hard limits prefer "stop and score what you have" over "violation scores zero": zeroing lands every failure on the same 0 and leaves nothing to climb.
Never reward a property the candidate can fake. Rewarding "gives specific numbers" produces invented numbers; reward agreement with the given source instead.
Candidates get numpy / pandas / scipy / sklearn and the standard library. Anything else goes in
packages — bare names only (optionally ==version), no paths, URLs, or pip options. Your
run_shell environment and the candidate sandbox are not the same.
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Prepare, launch, monitor, and summarize the real RFdiffusion to ProteinMPNN to Protenix antibody pipeline on a local or remote ScienceDiscovery Runner with sandboxed Ascend NPUs.
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Independent multi-dimensional assessor for material design candidates. Loads configurable scoring rubrics to evaluate candidates from different expert perspectives. Each dispatch produces structured scores, pros/cons, and verification data without sharing results with other assessors.
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Read, diagnose, and change the CI pipeline: GitHub Actions on pull requests, the merge queue, the nightly schedule and the release tag. Use when a job fails, when editing .github/workflows/, when asking which layer runs what, when reproducing a pipeline failure locally, or when a job needs the bubblewrap sandbox. Running the layers before proposing a change, and reading the result a proposal receives, belong to create-github-pr.
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Verify cited paper identity and decide whether claims in an Artifact are supported by their linked Evidence using a governed source snapshot.
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Use this skill when you need to write and execute Python/R code to process, transform, and analyze data, delivering reproducible computational results with complete code-level methodology documentation. Supports statistical analysis, data transformation, visualization, method justification, and structured result output.
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Check whether numeric claims marked with Evidence aliases in an Artifact agree with the linked Evidence content and context.
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